Variant report

Variant	rs11602209
Chromosome Location	chr11:16021737-16021738
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16020621..16022625-chr11:16024207..16026994,2	K562	blood:
2	chr11:16017320..16020283-chr11:16020429..16023052,2	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10500821	1.00[CEU][hapmap]
rs10500822	1.00[CEU][hapmap]
rs10500825	1.00[CEU][hapmap]
rs10734238	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10741687	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10741689	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766291	0.88[EUR][1000 genomes]
rs10766292	0.91[EUR][1000 genomes]
rs10766293	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10766294	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10766295	0.86[EUR][1000 genomes]
rs10832538	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10832539	0.88[EUR][1000 genomes]
rs10832540	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10832541	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10832542	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10832543	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832544	0.91[EUR][1000 genomes]
rs10832545	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023803	1.00[CEU][hapmap]
rs11023806	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11023807	0.87[EUR][1000 genomes]
rs11023808	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11023809	0.87[EUR][1000 genomes]
rs11023810	0.88[EUR][1000 genomes]
rs11023814	0.80[ASN][1000 genomes]
rs11023815	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11023819	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11023820	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023821	0.92[EUR][1000 genomes]
rs11023823	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023826	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023833	0.87[EUR][1000 genomes]
rs12276728	0.86[EUR][1000 genomes]
rs12278364	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418884	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12420343	0.84[EUR][1000 genomes]
rs12574859	1.00[CEU][hapmap]
rs12574862	1.00[CEU][hapmap]
rs12576286	1.00[CEU][hapmap]
rs12577378	1.00[CEU][hapmap]
rs1455101	1.00[CEU][hapmap]
rs16924862	1.00[CEU][hapmap]
rs16932405	1.00[CEU][hapmap]
rs16932409	1.00[CEU][hapmap]
rs16932414	1.00[CEU][hapmap]
rs16932416	1.00[CEU][hapmap]
rs16932455	1.00[CEU][hapmap]
rs16932458	1.00[CEU][hapmap]
rs16932580	1.00[CEU][hapmap]
rs16932585	1.00[CEU][hapmap]
rs16932620	1.00[CEU][hapmap]
rs16932670	1.00[CEU][hapmap]
rs1840422	1.00[CEU][hapmap]
rs34569224	0.87[EUR][1000 genomes]
rs35038372	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35189093	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35572903	0.87[EUR][1000 genomes]
rs36029390	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3922559	0.90[EUR][1000 genomes]
rs4279976	1.00[CEU][hapmap]
rs4335501	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4335502	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4342995	0.92[EUR][1000 genomes]
rs4437995	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4478958	1.00[CEU][hapmap]
rs4539287	0.80[ASN][1000 genomes]
rs4627036	0.87[EUR][1000 genomes]
rs4756841	0.86[EUR][1000 genomes]
rs4756842	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4757378	0.89[EUR][1000 genomes]
rs4757379	0.91[EUR][1000 genomes]
rs4757380	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7111279	0.91[EUR][1000 genomes]
rs7942659	1.00[CEU][hapmap]
rs7947265	0.92[EUR][1000 genomes]
rs9645647	0.84[EUR][1000 genomes]
rs9645648	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15999400-16022800	Weak transcription	K562	blood
2	chr11:16004800-16024600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:16007800-16023000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:16008000-16022800	Weak transcription	Fetal Intestine Small	intestine
5	chr11:16010800-16022800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:16010800-16022800	Weak transcription	Fetal Intestine Large	intestine
7	chr11:16011000-16033800	Weak transcription	Left Ventricle	heart
8	chr11:16011400-16023000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr11:16015600-16023600	Weak transcription	Fetal Muscle Leg	muscle
10	chr11:16020400-16023200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:16020600-16023000	Enhancers	Fetal Lung	lung
12	chr11:16020600-16023400	Enhancers	Osteobl	bone
13	chr11:16020800-16022200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:16020800-16023200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr11:16021000-16023400	Enhancers	HMEC	breast
16	chr11:16021200-16023000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr11:16021200-16023600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:16021200-16024000	Enhancers	NHEK	skin
19	chr11:16021200-16025400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:16021400-16023200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:16021400-16024200	Enhancers	NH-A	brain
22	chr11:16021600-16021800	Enhancers	Fetal Kidney	kidney
23	chr11:16021600-16021800	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr11:16021600-16022200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:16021600-16022200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:16021600-16023000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:16021600-16023000	Enhancers	NHDF-Ad	bronchial
28	chr11:16021600-16023000	Enhancers	NHLF	lung
29	chr11:16021600-16023200	Enhancers	HUVEC	blood vessel

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