Variant report

Variant	rs4279976
Chromosome Location	chr11:16059833-16059834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10500821	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10500822	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10500823	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10500824	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10500825	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10500826	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10500827	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11023803	1.00[CEU][hapmap]
rs11602209	1.00[CEU][hapmap]
rs12574107	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12574859	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12574862	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12575006	0.88[EUR][1000 genomes]
rs12575408	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12575412	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12575614	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12575858	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12576205	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12576286	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs12576586	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12576597	0.91[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12577378	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12577495	1.00[ASW][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12577528	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1378308	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1455101	0.90[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap]
rs1598296	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16924862	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs16932405	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs16932409	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs16932414	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16932416	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16932445	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16932450	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16932453	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16932455	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16932458	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16932469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16932474	0.81[ASW][hapmap];1.00[TSI][hapmap]
rs16932552	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16932570	1.00[CEU][hapmap]
rs16932573	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16932576	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16932580	0.90[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap]
rs16932585	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes]
rs16932620	0.90[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap]
rs16932622	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs16932625	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs16932630	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs16932634	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs16932650	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs16932653	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs16932655	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs16932664	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs16932670	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs16932711	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs16932719	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1840422	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs1840423	0.82[ASN][1000 genomes]
rs1840424	0.82[ASN][1000 genomes]
rs1960271	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2034792	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2351681	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2351682	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2351955	0.85[ASN][1000 genomes]
rs2935046	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4254041	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4466793	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4478958	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4486592	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4506613	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs55730626	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58002079	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58520714	0.88[EUR][1000 genomes]
rs59583634	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs60718933	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61347512	0.82[AFR][1000 genomes]
rs7107697	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7110987	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7114427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7114742	1.00[TSI][hapmap]
rs7122351	1.00[TSI][hapmap]
rs7126432	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7129224	0.94[CHB][hapmap];0.85[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73417055	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73417059	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7924380	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7933131	1.00[TSI][hapmap]
rs7936618	1.00[TSI][hapmap]
rs7936647	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7938500	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7938840	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7942659	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7946235	0.87[ASN][1000 genomes]
rs7947008	0.95[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7947337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7947622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7947979	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs966933	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs993698	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs996184	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1045933	chr11:16023805-16067955	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16024400-16067200	Weak transcription	Liver	Liver
2	chr11:16024800-16088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:16034200-16079200	Weak transcription	Pancreas	Pancrea
4	chr11:16036000-16073800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:16037600-16081200	Weak transcription	Psoas Muscle	Psoas
6	chr11:16038200-16065000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:16038200-16067200	Weak transcription	Fetal Muscle Leg	muscle
8	chr11:16043000-16102000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:16050000-16076200	Weak transcription	Fetal Kidney	kidney
10	chr11:16051000-16072400	Weak transcription	Esophagus	oesophagus
11	chr11:16053600-16061600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:16054200-16066800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr11:16054800-16062800	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr11:16055000-16064800	Weak transcription	Fetal Intestine Large	intestine
15	chr11:16056400-16065000	Weak transcription	Fetal Heart	heart
16	chr11:16056600-16067200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr11:16056600-16077200	Weak transcription	Right Ventricle	heart
18	chr11:16057600-16065200	Weak transcription	Left Ventricle	heart
19	chr11:16058000-16064800	Weak transcription	Fetal Intestine Small	intestine
20	chr11:16058600-16061800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:16058600-16066800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:16059200-16060200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:16059400-16067800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:16059800-16060600	Enhancers	Primary B cells from cord blood	blood

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