Variant report

Variant	rs2351682
Chromosome Location	chr11:16128951-16128952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16127568..16130193-chr11:16134623..16137035,2	K562	blood:
2	chr11:16126529..16129039-chr11:16133053..16135485,2	K562	blood:

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10500822	0.83[AFR][1000 genomes]
rs10500823	0.86[ASN][1000 genomes]
rs10500824	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10500825	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12574107	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12575412	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12577495	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1378308	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1598296	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16932552	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16932573	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16932576	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16932585	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16932634	0.83[AFR][1000 genomes]
rs1840423	0.87[ASN][1000 genomes]
rs1840424	0.87[ASN][1000 genomes]
rs1960271	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2034792	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2351681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2351955	0.84[ASN][1000 genomes]
rs2935046	0.91[AMR][1000 genomes]
rs4279976	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4506613	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs59583634	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61347512	0.84[AFR][1000 genomes]
rs7114427	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7946235	0.82[ASN][1000 genomes]
rs7947337	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs966933	0.83[AFR][1000 genomes]
rs996184	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16098600-16137000	Weak transcription	Pancreas	Pancrea
2	chr11:16119600-16130200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:16120800-16130800	Weak transcription	Esophagus	oesophagus
4	chr11:16121600-16135400	Weak transcription	Fetal Intestine Large	intestine
5	chr11:16121800-16136800	Weak transcription	Small Intestine	intestine
6	chr11:16122400-16132400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:16127200-16130800	Weak transcription	Fetal Intestine Small	intestine
8	chr11:16127400-16133200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:16127400-16136000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:16128200-16132400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:16128400-16133200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:16128600-16132400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:16128600-16133200	Weak transcription	Psoas Muscle	Psoas

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