Variant report

Variant	rs2351955
Chromosome Location	chr11:16115013-16115014
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16114661..16117349-chr11:16367658..16369395,2	K562	blood:
2	chr11:16113669..16115556-chr11:16118737..16121207,2	K562	blood:
3	chr11:16112771..16115921-chr11:16626623..16629918,3	K562	blood:
4	chr11:16110793..16113422-chr11:16114334..16116198,3	K562	blood:

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10500822	0.84[ASN][1000 genomes]
rs10500823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10500824	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10500825	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12573976	0.87[AFR][1000 genomes]
rs12574107	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12575412	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12577495	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1378308	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1598296	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1598297	0.80[AFR][1000 genomes]
rs16932469	0.83[ASN][1000 genomes]
rs16932552	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16932573	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16932576	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16932585	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16932622	0.87[AFR][1000 genomes]
rs16932650	0.84[AFR][1000 genomes]
rs1840422	0.84[AFR][1000 genomes]
rs1840423	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1840424	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1960271	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2034792	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2351681	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2351682	0.84[ASN][1000 genomes]
rs2935046	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4254041	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4279976	0.85[ASN][1000 genomes]
rs4506613	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59583634	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7107697	0.81[AFR][1000 genomes]
rs7109845	0.80[AFR][1000 genomes]
rs7110987	0.87[AFR][1000 genomes]
rs7114427	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7126432	0.87[AFR][1000 genomes]
rs7932204	0.87[AFR][1000 genomes]
rs7946235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7947337	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7947622	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs996184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16083200-16116000	Weak transcription	Fetal Intestine Large	intestine
2	chr11:16089400-16117400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:16097000-16115600	Weak transcription	Psoas Muscle	Psoas
4	chr11:16098600-16137000	Weak transcription	Pancreas	Pancrea
5	chr11:16108400-16118400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:16113000-16119200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:16113600-16117600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:16114000-16116200	Weak transcription	NHEK	skin
9	chr11:16114200-16115400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:16114200-16116800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:16114200-16117400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:16114200-16117600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr11:16114400-16115600	Enhancers	Liver	Liver
14	chr11:16114400-16115600	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr11:16114400-16116000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr11:16114600-16115400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr11:16114600-16115600	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr11:16114600-16116400	Enhancers	HepG2	liver
19	chr11:16114600-16117000	Enhancers	K562	blood
20	chr11:16114800-16115600	Weak transcription	Fetal Heart	heart
21	chr11:16114800-16116000	Weak transcription	Fetal Kidney	kidney
22	chr11:16114800-16119000	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links