Variant report

Variant	rs16932552
Chromosome Location	chr11:16118262-16118263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16116317..16118652-chr11:16120891..16122652,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10500822	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10500823	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10500824	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10500825	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12573976	0.80[ASN][1000 genomes]
rs12574107	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12575408	0.80[ASN][1000 genomes]
rs12575412	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12577495	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12577528	0.80[ASN][1000 genomes]
rs1378308	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1455101	0.80[ASN][1000 genomes]
rs1598296	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16932469	0.82[ASN][1000 genomes]
rs16932573	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16932576	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16932585	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16932622	0.80[ASN][1000 genomes]
rs16932625	0.80[ASN][1000 genomes]
rs16932630	0.80[ASN][1000 genomes]
rs16932634	0.85[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs16932650	0.80[ASN][1000 genomes]
rs16932653	0.80[ASN][1000 genomes]
rs16932655	0.80[ASN][1000 genomes]
rs16932664	0.80[ASN][1000 genomes]
rs1840422	0.80[ASN][1000 genomes]
rs1840423	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1840424	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1960271	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2034792	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2351681	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2351682	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2351955	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2935046	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35972839	0.80[ASN][1000 genomes]
rs4254041	0.82[ASN][1000 genomes]
rs4279976	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4506613	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55689121	0.80[ASN][1000 genomes]
rs59412323	0.80[ASN][1000 genomes]
rs59583634	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61347512	0.86[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7107697	0.80[ASN][1000 genomes]
rs7110987	0.80[ASN][1000 genomes]
rs7114427	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7126432	0.80[ASN][1000 genomes]
rs7946235	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7947337	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7947622	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs966933	0.85[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs993698	0.80[ASN][1000 genomes]
rs996184	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16098600-16137000	Weak transcription	Pancreas	Pancrea
2	chr11:16108400-16118400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:16113000-16119200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:16114800-16119000	Weak transcription	Brain Germinal Matrix	brain
5	chr11:16115400-16119800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:16115600-16118800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:16116000-16119200	Weak transcription	Left Ventricle	heart
8	chr11:16116200-16118800	Weak transcription	Liver	Liver
9	chr11:16116200-16119000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:16116200-16119000	Weak transcription	Psoas Muscle	Psoas
11	chr11:16116200-16122200	Weak transcription	Fetal Heart	heart
12	chr11:16116400-16118800	Weak transcription	Fetal Lung	lung
13	chr11:16116800-16118400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:16117200-16118800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:16117400-16118600	Enhancers	HMEC	breast
16	chr11:16117400-16122000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:16117400-16123200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:16117600-16118600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:16117600-16118600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr11:16117600-16120600	Weak transcription	Fetal Intestine Large	intestine
21	chr11:16117800-16118800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:16117800-16120600	Weak transcription	NHLF	lung
23	chr11:16118000-16120600	Weak transcription	HSMM	muscle
24	chr11:16118200-16119000	Enhancers	NHEK	skin
25	chr11:16118200-16119200	Enhancers	A549	lung
26	chr11:16118200-16119800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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