Variant report

Variant	rs966933
Chromosome Location	chr11:16160891-16160892
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10500821	1.00[CEU][hapmap]
rs10500822	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs10500823	0.80[ASN][1000 genomes]
rs10500824	0.86[YRI][hapmap];0.81[ASN][1000 genomes]
rs10500825	1.00[CEU][hapmap];0.80[ASN][1000 genomes]
rs10500826	0.96[ASN][1000 genomes]
rs10500827	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11023803	1.00[CEU][hapmap]
rs12573890	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12573976	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574107	0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12574859	1.00[CEU][hapmap]
rs12574862	1.00[CEU][hapmap]
rs12575408	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575412	0.86[YRI][hapmap];0.80[ASN][1000 genomes]
rs12576026	0.87[EUR][1000 genomes]
rs12576286	1.00[CEU][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12576891	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12577107	0.87[EUR][1000 genomes]
rs12577378	1.00[CEU][hapmap]
rs12577495	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12577528	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1378308	1.00[CEU][hapmap]
rs1455100	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1455101	1.00[CEU][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1598296	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs16924862	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16932405	1.00[CEU][hapmap]
rs16932409	1.00[CEU][hapmap]
rs16932416	1.00[CEU][hapmap]
rs16932455	1.00[CEU][hapmap]
rs16932458	1.00[CEU][hapmap]
rs16932552	0.85[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs16932573	0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs16932576	0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs16932580	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs16932585	1.00[CEU][hapmap];0.81[ASN][1000 genomes]
rs16932620	1.00[CEU][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16932622	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932625	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932630	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932634	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932650	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932653	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932655	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932664	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932670	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16932711	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16932719	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1840422	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1840423	0.81[ASN][1000 genomes]
rs1840424	0.81[ASN][1000 genomes]
rs1960271	1.00[CEU][hapmap];0.85[AFR][1000 genomes]
rs2034792	0.87[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2351681	0.83[AFR][1000 genomes]
rs2351682	0.83[AFR][1000 genomes]
rs34641020	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35972839	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4279976	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs4478958	1.00[CEU][hapmap]
rs4506613	1.00[CEU][hapmap];0.81[ASN][1000 genomes]
rs55689121	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55865094	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55882244	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59412323	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59583634	0.95[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs61094171	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61347512	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107697	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110987	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114427	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7126432	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932204	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7935396	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7936647	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7942659	1.00[CEU][hapmap]
rs7947337	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs993698	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16157800-16162400	Weak transcription	Fetal Intestine Small	intestine
2	chr11:16158400-16169200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links