Variant report

Variant	rs7936647
Chromosome Location	chr11:16205748-16205749
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16199096..16201886-chr11:16205151..16207192,2	MCF-7	breast:

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10500821	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs10500822	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10500823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs10500824	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10500825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10500826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10500827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12573890	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12573976	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12574107	0.80[ASN][1000 genomes]
rs12574859	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12574862	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12575408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12575412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12575614	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12575858	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12576026	0.80[EUR][1000 genomes]
rs12576205	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap]
rs12576286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576586	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap]
rs12576597	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs12576891	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12577107	0.80[EUR][1000 genomes]
rs12577378	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12577495	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12577528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1378308	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1455100	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1455101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1598296	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.80[ASN][1000 genomes]
rs1598297	0.84[YRI][hapmap]
rs16924862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932405	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs16932409	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs16932414	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap]
rs16932416	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs16932445	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932450	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932453	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932455	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932458	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932469	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs16932570	1.00[CEU][hapmap]
rs16932573	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs16932576	0.80[ASN][1000 genomes]
rs16932580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16932585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs16932620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16932622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16932625	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16932630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16932634	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16932650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16932653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16932655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16932664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16932670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16932719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1840422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1840423	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs1840424	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs1960271	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34641020	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35972839	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4254041	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs4279976	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4466793	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap]
rs4478958	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs4486592	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs4506613	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs55689121	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55865094	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55882244	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59412323	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59583634	0.83[ASN][1000 genomes]
rs61094171	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61347512	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7107697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7110987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7114427	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7126432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7129224	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs7924380	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs7932204	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7935396	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7938840	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap]
rs7942659	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs7947008	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs7947337	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7947622	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs7947979	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs966933	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs993698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs996184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv897012	chr11:16189326-16283644	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16194800-16206200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:16196800-16206400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:16197000-16207600	Weak transcription	Fetal Heart	heart
4	chr11:16199600-16206400	Weak transcription	Psoas Muscle	Psoas
5	chr11:16199800-16206400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:16201600-16206200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:16201600-16206200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:16201800-16206400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:16202000-16206200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:16202000-16206400	Weak transcription	Osteobl	bone
11	chr11:16202800-16206200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:16203600-16205800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr11:16203800-16206400	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr11:16204200-16206400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr11:16204200-16206400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:16204400-16205800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:16204400-16206000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:16204400-16206000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:16204600-16206400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr11:16205200-16206200	Enhancers	A549	lung
21	chr11:16205200-16206400	Enhancers	HepG2	liver
22	chr11:16205200-16207000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:16205400-16205800	Weak transcription	NHDF-Ad	bronchial
24	chr11:16205400-16206200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:16205400-16206200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr11:16205400-16208400	Enhancers	Liver	Liver
27	chr11:16205600-16207000	Enhancers	Muscle Satellite Cultured Cells	--
28	chr11:16205600-16207200	Enhancers	Fetal Intestine Large	intestine
29	chr11:16205600-16207200	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links