Variant report

Variant	rs7924380
Chromosome Location	chr11:16026816-16026817
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16020621..16022625-chr11:16024207..16026994,2	K562	blood:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10500821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MKK][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10500822	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10500823	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs10500824	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs10500825	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap]
rs10500826	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs10500827	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs11023803	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs12574859	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MKK][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12574862	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575006	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12575408	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12575412	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12575614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12576205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12576286	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap]
rs12576586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12576597	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577495	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap]
rs12577528	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs1378308	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs1455101	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap]
rs1598296	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap]
rs16924862	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap]
rs16932405	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16932409	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16932414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932416	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MKK][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932445	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16932450	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16932453	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16932455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16932458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.81[MKK][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16932469	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16932570	1.00[CEU][hapmap]
rs16932573	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap]
rs16932580	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap]
rs16932585	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap]
rs16932620	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap]
rs16932622	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap]
rs16932625	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs16932630	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap]
rs16932634	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs16932650	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs16932653	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs16932655	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap]
rs16932664	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs16932670	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap]
rs16932711	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs16932719	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs1840422	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap]
rs1960271	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs4254041	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4279976	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4466793	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4478958	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[MKK][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4486592	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4506613	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs55730626	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58002079	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58520714	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60718933	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7107697	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs7110987	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs7114427	0.95[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs7126432	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs7129224	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73417055	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73417059	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7936647	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs7938500	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942659	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MKK][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947008	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7947337	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs7947622	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs7947979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs993698	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs996184	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1045933	chr11:16023805-16067955	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16011000-16033800	Weak transcription	Left Ventricle	heart
2	chr11:16023400-16035400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:16023800-16027600	Weak transcription	K562	blood
4	chr11:16023800-16027800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:16023800-16029200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:16023800-16033200	Weak transcription	Fetal Muscle Leg	muscle
7	chr11:16023800-16033800	Weak transcription	Small Intestine	intestine
8	chr11:16023800-16035000	Weak transcription	Brain Substantia Nigra	brain
9	chr11:16023800-16050400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:16024200-16029600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:16024400-16028000	Weak transcription	Fetal Intestine Large	intestine
12	chr11:16024400-16033000	Weak transcription	Fetal Intestine Small	intestine
13	chr11:16024400-16067200	Weak transcription	Liver	Liver
14	chr11:16024800-16088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:16025000-16027600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:16025000-16028000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:16025000-16031800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:16025200-16027400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:16025200-16028000	Weak transcription	Fetal Heart	heart
20	chr11:16025200-16033000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr11:16025200-16034800	Weak transcription	Psoas Muscle	Psoas

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