Variant report

Variant	rs12577495
Chromosome Location	chr11:16072004-16072005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16067749..16070410-chr11:16071659..16073364,2	K562	blood:
2	chr11:16060678..16062242-chr11:16069879..16072547,3	K562	blood:
3	chr11:16070387..16073209-chr11:16075915..16077883,2	K562	blood:

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10500821	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.82[ASN][1000 genomes]
rs10500822	1.00[ASW][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10500823	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10500824	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10500825	0.86[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10500826	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10500827	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12574107	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12574859	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap]
rs12574862	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs12575408	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12575412	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12575614	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs12575858	0.86[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs12576205	0.86[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs12576286	0.86[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs12576586	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs12576597	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs12577378	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs12577528	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1378308	0.85[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1455101	0.90[ASW][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap]
rs1598296	0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16924862	0.86[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs16932405	0.86[CHB][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs16932409	0.86[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs16932414	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs16932416	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs16932445	0.86[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs16932450	0.86[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs16932453	0.86[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs16932455	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.83[ASN][1000 genomes]
rs16932458	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[TSI][hapmap];0.83[ASN][1000 genomes]
rs16932469	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16932474	0.81[ASW][hapmap];1.00[TSI][hapmap]
rs16932552	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16932573	0.89[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16932576	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16932580	0.90[ASW][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap]
rs16932585	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16932620	0.90[ASW][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap]
rs16932622	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs16932625	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs16932630	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs16932634	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs16932650	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs16932653	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs16932655	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs16932664	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs16932670	0.86[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs16932711	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs16932719	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1840422	0.86[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs1840423	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1840424	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1960271	0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2034792	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2351681	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2351682	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs2351955	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2935046	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4254041	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4279976	1.00[ASW][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4466793	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs4478958	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.81[ASN][1000 genomes]
rs4486592	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs4506613	0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58002079	0.81[ASN][1000 genomes]
rs59583634	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60718933	0.82[ASN][1000 genomes]
rs61347512	0.84[AFR][1000 genomes]
rs7107697	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7110987	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7114427	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7114742	1.00[TSI][hapmap]
rs7122351	1.00[TSI][hapmap]
rs7126432	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7129224	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs73417055	0.81[ASN][1000 genomes]
rs73417059	0.83[ASN][1000 genomes]
rs7924380	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap]
rs7933131	1.00[TSI][hapmap]
rs7936618	1.00[TSI][hapmap]
rs7936647	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7938840	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs7942659	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs7946235	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7947008	0.86[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs7947337	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947622	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7947979	0.84[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs966933	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs993698	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs996184	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16024800-16088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:16034200-16079200	Weak transcription	Pancreas	Pancrea
3	chr11:16036000-16073800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:16037600-16081200	Weak transcription	Psoas Muscle	Psoas
5	chr11:16043000-16102000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:16050000-16076200	Weak transcription	Fetal Kidney	kidney
7	chr11:16051000-16072400	Weak transcription	Esophagus	oesophagus
8	chr11:16056600-16077200	Weak transcription	Right Ventricle	heart
9	chr11:16065600-16080400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr11:16065600-16085400	Weak transcription	Fetal Heart	heart
11	chr11:16068000-16074400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:16068600-16078800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr11:16068800-16103800	Weak transcription	Left Ventricle	heart
14	chr11:16069000-16073600	Weak transcription	Fetal Intestine Small	intestine
15	chr11:16069000-16073600	Weak transcription	Fetal Muscle Leg	muscle
16	chr11:16069000-16074400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:16069000-16074400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:16069200-16073800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:16069400-16079400	Weak transcription	Liver	Liver
20	chr11:16069600-16080400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr11:16069800-16076200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr11:16070200-16077200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr11:16070800-16076000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:16071600-16074200	Weak transcription	Fetal Intestine Large	intestine
25	chr11:16071800-16077200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr11:16072000-16072600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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