Variant report

Variant	rs16932414
Chromosome Location	chr11:16023281-16023282
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16021826..16024394-chr11:16625714..16628105,2	K562	blood:
2	chr11:15987618..15990384-chr11:16022034..16024122,2	K562	blood:
3	chr11:16022109..16024928-chr11:16030034..16031853,2	K562	blood:

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10500821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10500822	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10500823	1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap]
rs10500824	1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap]
rs10500825	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs10500826	1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap]
rs10766292	0.81[YRI][hapmap]
rs10832544	0.84[AFR][1000 genomes]
rs11023803	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs11023821	0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs11602209	1.00[CEU][hapmap]
rs12574859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12574862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575006	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12575408	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap]
rs12575412	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap]
rs12575614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12576205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12576286	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs12576586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12576597	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577495	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs12577528	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap]
rs1378308	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs1455101	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs1598296	1.00[CEU][hapmap];0.94[CHB][hapmap]
rs16924862	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs16932405	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16932409	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16932416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932445	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16932450	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16932453	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16932455	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16932458	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16932469	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16932570	1.00[CEU][hapmap]
rs16932573	1.00[CEU][hapmap];0.94[CHB][hapmap]
rs16932580	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs16932585	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs16932620	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs16932622	1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap]
rs16932625	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs16932630	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap]
rs16932634	0.94[CHB][hapmap];0.83[JPT][hapmap]
rs16932650	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap]
rs16932653	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap]
rs16932655	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap]
rs16932664	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap]
rs16932670	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs16932711	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap]
rs16932719	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs1840422	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs1960271	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs3922559	0.81[YRI][hapmap]
rs4254041	1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4279976	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4466793	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4478958	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4486592	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4506613	0.94[CHB][hapmap];0.83[JPT][hapmap]
rs4757379	0.80[YRI][hapmap]
rs55730626	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58002079	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58520714	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60718933	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7107697	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap]
rs7110987	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap]
rs7114427	0.94[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs7126432	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap]
rs7129224	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73417055	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73417059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7924380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936647	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap]
rs7938500	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947008	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7947265	0.83[AFR][1000 genomes]
rs7947337	0.94[CHB][hapmap];0.83[JPT][hapmap]
rs7947622	1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap]
rs7947979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs993698	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap]
rs996184	1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16004800-16024600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:16011000-16033800	Weak transcription	Left Ventricle	heart
3	chr11:16015600-16023600	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:16020600-16023400	Enhancers	Osteobl	bone
5	chr11:16021000-16023400	Enhancers	HMEC	breast
6	chr11:16021200-16023600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:16021200-16024000	Enhancers	NHEK	skin
8	chr11:16021200-16025400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:16021400-16024200	Enhancers	NH-A	brain
10	chr11:16022200-16023800	Enhancers	Small Intestine	intestine
11	chr11:16022400-16023800	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr11:16022600-16023400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:16022600-16023800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:16022600-16024800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:16022800-16023400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr11:16022800-16023400	Enhancers	Stomach Mucosa	stomach
17	chr11:16022800-16023600	Enhancers	HSMMtube	muscle
18	chr11:16022800-16023800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr11:16022800-16023800	Enhancers	K562	blood
20	chr11:16022800-16024400	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr11:16022800-16024400	Enhancers	Fetal Intestine Large	intestine
22	chr11:16022800-16024400	Enhancers	Fetal Intestine Small	intestine
23	chr11:16022800-16024800	Enhancers	HepG2	liver
24	chr11:16022800-16025000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:16023000-16023400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:16023000-16023400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:16023000-16023400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr11:16023000-16023400	Flanking Active TSS	NHDF-Ad	bronchial
29	chr11:16023000-16023400	Flanking Active TSS	NHLF	lung
30	chr11:16023000-16023600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:16023000-16023600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr11:16023000-16023800	Enhancers	Brain Anterior Caudate	brain
33	chr11:16023000-16023800	Flanking Active TSS	Duodenum Mucosa	Duodenum
34	chr11:16023000-16023800	Enhancers	Fetal Kidney	kidney
35	chr11:16023000-16023800	Flanking Active TSS	Fetal Lung	lung
36	chr11:16023000-16023800	Enhancers	Psoas Muscle	Psoas
37	chr11:16023000-16024000	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr11:16023000-16024000	Enhancers	HSMM	muscle
39	chr11:16023000-16024200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:16023000-16024200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
41	chr11:16023000-16024200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:16023000-16024400	Enhancers	Fetal Stomach	stomach
43	chr11:16023000-16024400	Enhancers	Ovary	ovary
44	chr11:16023000-16025000	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr11:16023200-16023400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr11:16023200-16023400	Enhancers	Pancreatic Islets	Pancreatic Islet
47	chr11:16023200-16023400	Flanking Active TSS	A549	lung
48	chr11:16023200-16023600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr11:16023200-16023600	Enhancers	Hela-S3	cervix
50	chr11:16023200-16023800	Flanking Active TSS	HUVEC	blood vessel

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