Variant report

Variant	rs11023803
Chromosome Location	chr11:15992319-15992320
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:15987521..15990224-chr11:15992075..15994987,3	K562	blood:
2	chr11:15973156..15975053-chr11:15990849..15992602,2	K562	blood:
3	chr11:15990415..15992809-chr11:15993723..15995511,3	K562	blood:
4	chr11:15989595..15993069-chr11:16007793..16010685,3	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10500821	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs10500822	1.00[CEU][hapmap]
rs10500823	1.00[CEU][hapmap]
rs10500824	1.00[CEU][hapmap]
rs10500825	1.00[CEU][hapmap]
rs11602209	1.00[CEU][hapmap]
rs12574859	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs12574862	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs12575408	1.00[CEU][hapmap]
rs12575412	1.00[CEU][hapmap]
rs12575614	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs12575858	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs12576205	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs12576286	1.00[CEU][hapmap]
rs12576586	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs12577378	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs12577528	1.00[CEU][hapmap]
rs1378308	1.00[CEU][hapmap]
rs1455101	1.00[CEU][hapmap]
rs1598296	1.00[CEU][hapmap]
rs16932405	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs16932409	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs16932414	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs16932416	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs16932445	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs16932450	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs16932453	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs16932455	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs16932458	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs16932469	1.00[CEU][hapmap]
rs16932570	1.00[CEU][hapmap]
rs16932573	1.00[CEU][hapmap]
rs16932580	1.00[CEU][hapmap]
rs16932585	1.00[CEU][hapmap]
rs16932620	1.00[CEU][hapmap]
rs16932622	1.00[CEU][hapmap]
rs16932630	1.00[CEU][hapmap]
rs16932634	1.00[CEU][hapmap]
rs16932650	1.00[CEU][hapmap]
rs16932653	1.00[CEU][hapmap]
rs16932655	1.00[CEU][hapmap]
rs16932664	1.00[CEU][hapmap]
rs1840422	1.00[CEU][hapmap]
rs1960271	1.00[CEU][hapmap]
rs4254041	1.00[CEU][hapmap]
rs4279976	1.00[CEU][hapmap]
rs4466793	1.00[CEU][hapmap]
rs4478958	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs4486592	1.00[CEU][hapmap]
rs4506613	1.00[CEU][hapmap]
rs59410528	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61570918	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7107697	1.00[CEU][hapmap]
rs7110987	1.00[CEU][hapmap]
rs7114427	1.00[CEU][hapmap]
rs7126432	1.00[CEU][hapmap]
rs7924380	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs7938840	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs7942659	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs7947008	0.82[CHB][hapmap]
rs7947337	1.00[CEU][hapmap]
rs7947622	1.00[CEU][hapmap]
rs7947979	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs966933	1.00[CEU][hapmap]
rs993698	1.00[CEU][hapmap]
rs996184	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15985800-15993000	Enhancers	HMEC	breast
2	chr11:15986800-15992600	Enhancers	Stomach Mucosa	stomach
3	chr11:15987200-15992600	Enhancers	Fetal Heart	heart
4	chr11:15988000-15992400	Weak transcription	Esophagus	oesophagus
5	chr11:15988000-15992400	Weak transcription	Pancreas	Pancrea
6	chr11:15988600-15992600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:15988800-15992400	Enhancers	Duodenum Mucosa	Duodenum
8	chr11:15989000-15992600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr11:15990000-15993000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:15990400-15993000	Weak transcription	Fetal Intestine Large	intestine
11	chr11:15990400-15995200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr11:15990400-16011600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:15990600-15992400	Weak transcription	Right Ventricle	heart
14	chr11:15991000-15992400	Weak transcription	Psoas Muscle	Psoas
15	chr11:15991200-15992400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:15991200-15992600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:15991200-15992600	Weak transcription	Fetal Intestine Small	intestine
18	chr11:15991200-15993800	Enhancers	Adipose Nuclei	Adipose
19	chr11:15991200-15996000	Weak transcription	Brain Germinal Matrix	brain
20	chr11:15991400-15993200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:15991600-15992800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:15991600-15992800	Enhancers	NHEK	skin
23	chr11:15991600-15993000	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr11:15991600-15993200	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr11:15991600-15993200	Enhancers	K562	blood
26	chr11:15991600-16006600	Weak transcription	Liver	Liver
27	chr11:15991800-15992400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:15991800-15992600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:15991800-15992600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:15991800-15997200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:15991800-15997400	Weak transcription	HepG2	liver
32	chr11:15991800-15998000	Weak transcription	Aorta	Aorta
33	chr11:15991800-16006800	Weak transcription	Fetal Muscle Leg	muscle
34	chr11:15992000-15992400	Enhancers	Muscle Satellite Cultured Cells	--
35	chr11:15992000-15992400	Weak transcription	NHDF-Ad	bronchial
36	chr11:15992000-15992800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:15992000-15992800	Enhancers	Osteobl	bone
38	chr11:15992000-15993000	Enhancers	GM12878-XiMat	blood
39	chr11:15992000-15993200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:15992000-15993600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr11:15992000-15994800	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr11:15992000-15997200	Weak transcription	NHLF	lung
43	chr11:15992000-15997400	Weak transcription	Fetal Lung	lung
44	chr11:15992000-15997400	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr11:15992200-15992600	Enhancers	Brain Angular Gyrus	brain
46	chr11:15992200-15992800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr11:15992200-15992800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr11:15992200-15993000	Enhancers	Right Atrium	heart
49	chr11:15992200-15993200	Enhancers	Left Ventricle	heart

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