Variant report

Variant	rs59410528
Chromosome Location	chr11:15993568-15993569
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:15993560..15998365-chr11:15999415..16005158,8	K562	blood:
2	chr11:15987521..15990224-chr11:15992075..15994987,3	K562	blood:
3	chr11:15982733..15985578-chr11:15992590..15995535,2	K562	blood:
4	chr11:15993161..15994874-chr11:15996366..15998234,2	K562	blood:
5	chr11:15993560..15995587-chr11:16001386..16003800,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11023803	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61570918	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15990400-15995200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:15990400-16011600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:15991200-15993800	Enhancers	Adipose Nuclei	Adipose
4	chr11:15991200-15996000	Weak transcription	Brain Germinal Matrix	brain
5	chr11:15991600-16006600	Weak transcription	Liver	Liver
6	chr11:15991800-15997200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:15991800-15997400	Weak transcription	HepG2	liver
8	chr11:15991800-15998000	Weak transcription	Aorta	Aorta
9	chr11:15991800-16006800	Weak transcription	Fetal Muscle Leg	muscle
10	chr11:15992000-15993600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:15992000-15994800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr11:15992000-15997200	Weak transcription	NHLF	lung
13	chr11:15992000-15997400	Weak transcription	Fetal Lung	lung
14	chr11:15992000-15997400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:15992400-16006600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr11:15992600-15993600	Strong transcription	Fetal Intestine Small	intestine
17	chr11:15992600-15993800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:15992600-15994000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:15992600-15997600	Weak transcription	Fetal Heart	heart
20	chr11:15992600-15998000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:15992600-16002400	Weak transcription	Stomach Mucosa	stomach
22	chr11:15992600-16006800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:15992800-15997000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:15992800-15997400	Weak transcription	Osteobl	bone
25	chr11:15992800-15998000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:15992800-15998000	Weak transcription	NHEK	skin
27	chr11:15993000-15995400	Strong transcription	Fetal Intestine Large	intestine
28	chr11:15993000-15997200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:15993000-15997400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:15993000-15999000	Weak transcription	Right Atrium	heart
31	chr11:15993000-16006800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr11:15993000-16010600	Weak transcription	Pancreas	Pancrea
33	chr11:15993000-16012800	Weak transcription	Right Ventricle	heart
34	chr11:15993200-15997400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:15993200-15997600	Weak transcription	K562	blood
36	chr11:15993200-15997800	Weak transcription	Psoas Muscle	Psoas
37	chr11:15993200-16009600	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr11:15993200-16010400	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links