Variant report

Variant	rs993698
Chromosome Location	chr11:16179325-16179326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16178415..16182237-chr11:16182900..16185853,4	K562	blood:

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10500821	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs10500822	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10500823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10500824	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10500825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs10500826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10500827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11023803	1.00[CEU][hapmap]
rs12573890	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12573976	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574107	0.81[ASN][1000 genomes]
rs12574859	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs12574862	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs12575408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12575614	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12575858	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12576026	0.87[EUR][1000 genomes]
rs12576205	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap]
rs12576286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12576586	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap]
rs12576597	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs12576891	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12577107	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12577378	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs12577495	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12577528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1378308	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1455100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1455101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1598296	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.81[ASN][1000 genomes]
rs16924862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16932405	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs16932409	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap]
rs16932414	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap]
rs16932416	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs16932445	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932450	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932453	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932455	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs16932458	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs16932469	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs16932552	0.80[ASN][1000 genomes]
rs16932570	1.00[CEU][hapmap]
rs16932573	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs16932576	0.81[ASN][1000 genomes]
rs16932580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16932585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs16932620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16932622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932625	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932634	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16932711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16932719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1840422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1840423	0.81[ASN][1000 genomes]
rs1840424	0.81[ASN][1000 genomes]
rs1960271	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2034792	0.80[ASN][1000 genomes]
rs34641020	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35972839	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4254041	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4279976	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4466793	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap]
rs4478958	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs4486592	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs4506613	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs55689121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55865094	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55882244	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59412323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59583634	0.84[ASN][1000 genomes]
rs61094171	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61347512	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114427	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7126432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129224	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs7924380	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs7932204	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7935396	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7936647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7938840	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap]
rs7942659	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs7947008	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs7947337	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7947622	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7947979	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs966933	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs996184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16172400-16191400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:16172600-16191400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:16174200-16191200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:16174800-16180000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:16175000-16180800	Enhancers	NHEK	skin
6	chr11:16175200-16180600	Enhancers	HMEC	breast
7	chr11:16177000-16180000	Weak transcription	Hela-S3	cervix
8	chr11:16177200-16179800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:16177600-16181000	Enhancers	A549	lung
10	chr11:16177600-16187800	Weak transcription	Fetal Intestine Small	intestine
11	chr11:16178000-16185200	Weak transcription	Fetal Intestine Large	intestine
12	chr11:16178800-16180800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:16179000-16180000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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