Variant report

Variant	rs4506613
Chromosome Location	chr11:16123757-16123758
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10500821	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs10500822	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10500823	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10500824	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10500825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10500826	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10500827	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11023803	1.00[CEU][hapmap]
rs12573976	0.81[ASN][1000 genomes]
rs12574107	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574859	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12574862	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12575408	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12575412	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12575614	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12575858	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12576205	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs12576286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12576586	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs12576597	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs12577378	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12577495	0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12577528	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1378308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1455100	0.80[ASN][1000 genomes]
rs1455101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1598296	1.00[CHB][hapmap];0.96[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs16932405	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs16932409	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs16932414	0.94[CHB][hapmap];0.83[JPT][hapmap]
rs16932416	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs16932445	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932450	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932453	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932455	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932458	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932469	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs16932552	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16932573	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932576	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16932585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16932620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16932622	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16932625	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16932630	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16932634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16932650	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16932653	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16932655	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16932664	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16932670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs16932711	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16932719	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1840422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1840423	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1840424	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1960271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2014828	0.80[YRI][hapmap]
rs2034792	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2351681	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2351682	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2351955	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2935046	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35972839	0.81[ASN][1000 genomes]
rs4254041	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4279976	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4466793	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs4478958	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs4486592	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs4617548	0.80[YRI][hapmap]
rs55689121	0.81[ASN][1000 genomes]
rs55865094	0.81[ASN][1000 genomes]
rs59412323	0.81[ASN][1000 genomes]
rs59583634	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61347512	0.81[ASN][1000 genomes]
rs7107697	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7110987	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7114427	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7126432	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7129224	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs7924380	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs7932204	0.80[ASN][1000 genomes]
rs7936647	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7938840	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs7942659	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs7946235	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7947008	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs7947337	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7947622	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7947979	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs9651573	0.80[YRI][hapmap]
rs966933	1.00[CEU][hapmap];0.81[ASN][1000 genomes]
rs993698	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs996184	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16098600-16137000	Weak transcription	Pancreas	Pancrea
2	chr11:16119600-16130200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:16120800-16130800	Weak transcription	Esophagus	oesophagus
4	chr11:16121600-16135400	Weak transcription	Fetal Intestine Large	intestine
5	chr11:16121800-16136800	Weak transcription	Small Intestine	intestine
6	chr11:16122000-16127000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:16122000-16127000	Weak transcription	Liver	Liver
8	chr11:16122200-16124600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr11:16122400-16132400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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