Variant report

Variant	rs16932450
Chromosome Location	chr11:16039026-16039027
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10500821	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10500822	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10500823	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs10500824	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs10500825	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs10500826	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs10500827	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs10832544	0.82[AFR][1000 genomes]
rs11023803	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs11023821	0.93[YRI][hapmap]
rs12574859	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12574862	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12575006	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12575408	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs12575412	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs12575614	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12575858	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12576205	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12576286	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs12576586	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12576597	0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12577378	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12577495	0.86[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs12577528	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs1378308	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs1455101	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs1598296	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap]
rs16924862	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932405	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16932409	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16932414	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16932416	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16932445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16932453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932469	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16932570	1.00[CEU][hapmap]
rs16932573	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap]
rs16932580	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932585	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932620	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932622	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932625	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs16932630	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932634	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932650	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932653	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932655	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932664	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932670	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932711	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16932719	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs1840422	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs1960271	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs4254041	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4279976	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4466793	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4478958	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4486592	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4506613	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs55730626	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58002079	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58520714	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60718933	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7107697	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs7110987	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs7114427	0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs7126432	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs7129224	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73417055	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73417059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7924380	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7936647	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs7938500	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7938840	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7942659	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7947008	1.00[CHB][hapmap];0.96[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7947265	0.81[AFR][1000 genomes]
rs7947337	0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs7947622	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs7947979	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs993698	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs996184	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1045933	chr11:16023805-16067955	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16023800-16050400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:16024400-16067200	Weak transcription	Liver	Liver
3	chr11:16024800-16088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:16034200-16040600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:16034200-16079200	Weak transcription	Pancreas	Pancrea
6	chr11:16034800-16042800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:16035000-16057400	Weak transcription	Fetal Intestine Small	intestine
8	chr11:16036000-16040400	Weak transcription	Fetal Kidney	kidney
9	chr11:16036000-16041600	Weak transcription	Left Ventricle	heart
10	chr11:16036000-16042800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:16036000-16073800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:16036800-16039800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr11:16037000-16041000	Enhancers	Fetal Lung	lung
14	chr11:16037200-16039600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr11:16037400-16041600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr11:16037600-16040400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:16037600-16041600	Weak transcription	Brain Anterior Caudate	brain
18	chr11:16037600-16081200	Weak transcription	Psoas Muscle	Psoas
19	chr11:16037800-16047600	Weak transcription	Fetal Intestine Large	intestine
20	chr11:16038000-16039200	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr11:16038000-16039200	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr11:16038000-16039200	Enhancers	Fetal Heart	heart
23	chr11:16038200-16040000	Enhancers	Brain Germinal Matrix	brain
24	chr11:16038200-16059200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:16038200-16065000	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr11:16038200-16067200	Weak transcription	Fetal Muscle Leg	muscle
27	chr11:16038400-16039200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:16038600-16040600	Weak transcription	Fetal Brain Female	brain
29	chr11:16038600-16042000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr11:16038800-16043200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr11:16039000-16039600	Enhancers	Ovary	ovary
32	chr11:16039000-16059000	Weak transcription	Aorta	Aorta

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