Variant report

Variant	rs3922559
Chromosome Location	chr11:16008235-16008236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15989595..15993069-chr11:16007793..16010685,3	K562	blood:
2	chr11:16006435..16009165-chr11:16010685..16012252,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10734238	0.81[EUR][1000 genomes]
rs10741687	1.00[CEU][hapmap];0.87[GIH][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs10741688	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10741689	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs10766291	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10766292	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10766293	0.96[CEU][hapmap];0.87[GIH][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs10766294	1.00[CEU][hapmap];0.87[GIH][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs10766295	0.96[CEU][hapmap];0.90[TSI][hapmap]
rs10766298	0.96[CEU][hapmap];0.90[TSI][hapmap]
rs10766300	0.96[CEU][hapmap]
rs10832538	0.83[EUR][1000 genomes]
rs10832539	0.82[EUR][1000 genomes]
rs10832540	0.82[EUR][1000 genomes]
rs10832541	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs10832542	0.85[CEU][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs10832543	0.96[CEU][hapmap];0.87[GIH][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs10832544	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10832545	0.92[EUR][1000 genomes]
rs10832551	0.92[CEU][hapmap]
rs10832553	0.96[CEU][hapmap]
rs10832554	0.96[CEU][hapmap];0.90[TSI][hapmap]
rs11023806	0.81[EUR][1000 genomes]
rs11023807	0.81[EUR][1000 genomes]
rs11023808	0.81[EUR][1000 genomes]
rs11023809	0.81[EUR][1000 genomes]
rs11023810	0.82[EUR][1000 genomes]
rs11023811	0.83[ASN][1000 genomes]
rs11023815	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs11023819	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11023820	1.00[CEU][hapmap];0.84[GIH][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs11023821	1.00[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.86[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11023823	0.91[EUR][1000 genomes]
rs11023826	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11023833	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs11602209	0.90[EUR][1000 genomes]
rs12276728	0.85[CEU][hapmap]
rs12278364	0.91[EUR][1000 genomes]
rs12418884	0.80[EUR][1000 genomes]
rs1455106	0.96[CEU][hapmap];0.90[TSI][hapmap]
rs16932414	0.81[YRI][hapmap]
rs16932458	0.84[LWK][hapmap]
rs34569224	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35038372	0.81[EUR][1000 genomes]
rs35189093	0.82[EUR][1000 genomes]
rs35572903	0.81[EUR][1000 genomes]
rs36029390	0.81[EUR][1000 genomes]
rs4335501	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4335502	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4342995	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4437995	1.00[CEU][hapmap];0.87[GIH][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs4539287	0.86[TSI][hapmap]
rs4545520	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs4627036	0.81[EUR][1000 genomes]
rs4756841	0.81[CEU][hapmap];0.84[GIH][hapmap];0.93[TSI][hapmap]
rs4756842	0.85[CEU][hapmap];0.87[GIH][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes]
rs4757378	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4757379	0.93[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4757380	0.92[CEU][hapmap];0.84[GIH][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs7111279	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7942880	0.81[ASW][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];0.89[ASN][1000 genomes]
rs7947265	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9645647	0.92[CEU][hapmap];0.83[CHB][hapmap];0.86[GIH][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9645648	0.96[CEU][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15990400-16011600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:15993000-16010600	Weak transcription	Pancreas	Pancrea
3	chr11:15993000-16012800	Weak transcription	Right Ventricle	heart
4	chr11:15993200-16009600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr11:15993200-16010400	Weak transcription	Left Ventricle	heart
6	chr11:15998200-16011600	Weak transcription	Aorta	Aorta
7	chr11:15999200-16009800	Weak transcription	Psoas Muscle	Psoas
8	chr11:15999400-16022800	Weak transcription	K562	blood
9	chr11:15999600-16009800	Weak transcription	Fetal Heart	heart
10	chr11:16001800-16010400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:16003000-16008600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr11:16004400-16010000	Weak transcription	Adipose Nuclei	Adipose
13	chr11:16004800-16024600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:16006000-16009600	Weak transcription	Esophagus	oesophagus
15	chr11:16006600-16008800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:16006600-16010800	Enhancers	Fetal Lung	lung
17	chr11:16006600-16010800	Enhancers	Fetal Stomach	stomach
18	chr11:16006800-16008400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:16007400-16009600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:16007800-16009600	Weak transcription	Liver	Liver
21	chr11:16007800-16009800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr11:16007800-16010400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:16007800-16010600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:16007800-16011000	Enhancers	Fetal Muscle Leg	muscle
25	chr11:16007800-16023000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr11:16008000-16008400	Enhancers	Ovary	ovary
27	chr11:16008000-16009000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:16008000-16022800	Weak transcription	Fetal Intestine Small	intestine
29	chr11:16008200-16010200	Weak transcription	Fetal Intestine Large	intestine

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