Variant report

Variant	rs9645648
Chromosome Location	chr11:16041558-16041559
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16034951..16037801-chr11:16040174..16041965,2	K562	blood:
2	chr11:16032786..16036451-chr11:16039084..16041674,3	K562	blood:

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10734238	0.81[EUR][1000 genomes]
rs10741687	0.96[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10741689	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10766291	0.92[CEU][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs10766292	0.92[CEU][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs10766293	0.92[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10766294	0.96[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10766295	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10766298	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap]
rs10766300	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap]
rs10766301	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap]
rs10832538	0.81[EUR][1000 genomes]
rs10832539	0.83[EUR][1000 genomes]
rs10832540	0.82[EUR][1000 genomes]
rs10832541	0.82[EUR][1000 genomes]
rs10832542	0.81[CEU][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs10832543	0.92[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10832544	0.84[EUR][1000 genomes]
rs10832545	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10832551	0.96[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap]
rs10832553	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap]
rs10832554	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap]
rs10832555	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs11023806	0.81[EUR][1000 genomes]
rs11023807	0.82[EUR][1000 genomes]
rs11023808	0.81[EUR][1000 genomes]
rs11023809	0.82[EUR][1000 genomes]
rs11023810	0.83[EUR][1000 genomes]
rs11023815	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11023819	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11023820	0.96[CEU][hapmap];0.85[GIH][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11023821	0.92[CEU][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs11023823	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11023826	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11023833	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11023860	0.94[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.92[JPT][hapmap]
rs11602209	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12276728	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs12278364	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12418884	0.81[EUR][1000 genomes]
rs1356647	0.94[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.92[JPT][hapmap]
rs1378305	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs1455104	0.94[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.92[JPT][hapmap]
rs1455106	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1455109	0.94[CHB][hapmap];0.91[JPT][hapmap]
rs1455111	0.94[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.92[JPT][hapmap]
rs1455115	0.94[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.92[JPT][hapmap]
rs1455117	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs1914875	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs1949482	0.94[CHB][hapmap];0.91[JPT][hapmap]
rs1949483	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs2124202	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs34569224	0.82[EUR][1000 genomes]
rs35038372	0.81[EUR][1000 genomes]
rs35189093	0.82[EUR][1000 genomes]
rs35572903	0.81[EUR][1000 genomes]
rs36029390	0.81[EUR][1000 genomes]
rs3903292	0.94[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.92[JPT][hapmap]
rs3922559	0.96[CEU][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs4335501	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4335502	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4342995	0.92[CEU][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs4437995	0.96[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4539287	0.82[CEU][hapmap];0.92[GIH][hapmap];0.83[TSI][hapmap]
rs4627036	0.82[EUR][1000 genomes]
rs4756841	0.86[GIH][hapmap];0.86[TSI][hapmap]
rs4756842	0.81[CEU][hapmap];0.89[GIH][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs4757378	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs4757379	0.92[CEU][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs4757380	0.96[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6486278	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs7108091	0.94[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.92[JPT][hapmap]
rs7111279	0.84[EUR][1000 genomes]
rs7118395	0.94[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.92[JPT][hapmap]
rs7926424	0.94[CHB][hapmap];0.91[JPT][hapmap]
rs7931734	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs7947265	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs7950736	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs9645647	0.96[CEU][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs978294	0.94[CHB][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1045933	chr11:16023805-16067955	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16023800-16050400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:16024400-16067200	Weak transcription	Liver	Liver
3	chr11:16024800-16088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:16034200-16079200	Weak transcription	Pancreas	Pancrea
5	chr11:16034800-16042800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:16035000-16057400	Weak transcription	Fetal Intestine Small	intestine
7	chr11:16036000-16041600	Weak transcription	Left Ventricle	heart
8	chr11:16036000-16042800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:16036000-16073800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:16037400-16041600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:16037600-16041600	Weak transcription	Brain Anterior Caudate	brain
12	chr11:16037600-16081200	Weak transcription	Psoas Muscle	Psoas
13	chr11:16037800-16047600	Weak transcription	Fetal Intestine Large	intestine
14	chr11:16038200-16059200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:16038200-16065000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr11:16038200-16067200	Weak transcription	Fetal Muscle Leg	muscle
17	chr11:16038600-16042000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr11:16038800-16043200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr11:16039000-16059000	Weak transcription	Aorta	Aorta
20	chr11:16039600-16041600	Weak transcription	Ovary	ovary
21	chr11:16039800-16053000	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:16040000-16047400	Weak transcription	Brain Germinal Matrix	brain
23	chr11:16040400-16042200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:16041400-16042000	Enhancers	Fetal Lung	lung

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