Variant report

Variant	rs10832551
Chromosome Location	chr11:16155738-16155739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16153177..16156147-chr11:16157029..16158765,2	K562	blood:
2	chr11:16149823..16152232-chr11:16154074..16156532,2	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10741687	0.92[CEU][hapmap]
rs10741689	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs10766291	0.88[CEU][hapmap]
rs10766292	0.88[CEU][hapmap]
rs10766293	0.88[CEU][hapmap]
rs10766294	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs10766295	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10766296	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10766298	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766300	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10766301	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10832543	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs10832552	0.91[EUR][1000 genomes]
rs10832553	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs10832554	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10832555	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10832556	0.86[ASN][1000 genomes]
rs10832557	0.83[ASN][1000 genomes]
rs11023815	0.89[CEU][hapmap]
rs11023819	0.89[CEU][hapmap]
rs11023820	0.92[CEU][hapmap]
rs11023821	0.88[CEU][hapmap]
rs11023826	0.89[CEU][hapmap]
rs11023833	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs11023860	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11023879	1.00[YRI][hapmap]
rs1349984	0.94[ASN][1000 genomes]
rs1349985	0.94[ASN][1000 genomes]
rs1349986	0.94[ASN][1000 genomes]
rs1356647	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1378305	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1455104	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1455106	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1455109	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1455111	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1455115	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1455117	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1914875	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1949482	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1949483	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2054095	0.87[ASN][1000 genomes]
rs2124202	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3903292	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3922559	0.92[CEU][hapmap]
rs4335501	0.89[CEU][hapmap]
rs4335502	0.89[CEU][hapmap]
rs4342995	0.88[CEU][hapmap]
rs4437995	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs4539287	1.00[YRI][hapmap]
rs4756841	1.00[YRI][hapmap]
rs4756842	1.00[YRI][hapmap]
rs4757378	0.85[CEU][hapmap]
rs4757379	0.88[CEU][hapmap]
rs4757380	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs6486276	0.94[ASN][1000 genomes]
rs6486277	0.87[ASN][1000 genomes]
rs6486278	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6486279	0.87[ASN][1000 genomes]
rs7102224	0.89[ASN][1000 genomes]
rs7108091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7112473	0.88[ASN][1000 genomes]
rs7114017	0.89[ASN][1000 genomes]
rs7118395	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7131157	0.86[ASN][1000 genomes]
rs7926424	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7931734	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7947265	0.85[CEU][hapmap]
rs7950736	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9645647	0.92[CEU][hapmap]
rs9645648	0.96[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap]
rs978294	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16148400-16160200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:16154800-16156000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:16155600-16156400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links