Variant report

Variant	rs11023879
Chromosome Location	chr11:16244497-16244498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16209269..16212267-chr11:16243598..16245269,2	K562	blood:

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10430890	1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs10734239	0.92[ASN][1000 genomes]
rs10741693	0.92[ASN][1000 genomes]
rs10741694	0.90[ASN][1000 genomes]
rs10741695	0.92[ASN][1000 genomes]
rs10766295	1.00[YRI][hapmap]
rs10766298	1.00[YRI][hapmap]
rs10766300	1.00[YRI][hapmap]
rs10766301	1.00[YRI][hapmap]
rs10766308	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10766309	0.93[ASN][1000 genomes]
rs10766312	0.92[ASN][1000 genomes]
rs10766314	0.92[ASN][1000 genomes]
rs10766315	0.92[ASN][1000 genomes]
rs10766318	0.81[ASN][1000 genomes]
rs10832551	1.00[YRI][hapmap]
rs10832553	1.00[YRI][hapmap]
rs10832554	1.00[YRI][hapmap]
rs10832558	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10832568	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10832571	1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10832573	1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs10832575	0.92[ASN][1000 genomes]
rs10832576	0.92[ASN][1000 genomes]
rs10832578	0.92[ASN][1000 genomes]
rs10832579	0.92[ASN][1000 genomes]
rs10832582	1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs10832584	0.92[ASN][1000 genomes]
rs10832585	1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs10832586	0.84[ASN][1000 genomes]
rs11023833	1.00[YRI][hapmap]
rs11023871	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11023890	0.92[ASN][1000 genomes]
rs11023893	0.92[ASN][1000 genomes]
rs11023897	0.90[ASN][1000 genomes]
rs11023901	0.88[ASN][1000 genomes]
rs11023902	0.92[ASN][1000 genomes]
rs11023906	0.80[ASN][1000 genomes]
rs11023909	0.80[ASN][1000 genomes]
rs1155685	0.81[ASN][1000 genomes]
rs1156725	0.81[ASN][1000 genomes]
rs11822790	1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12798653	0.81[ASN][1000 genomes]
rs12798980	1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs12799126	0.81[ASN][1000 genomes]
rs12800049	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12800659	0.81[ASN][1000 genomes]
rs1304640	0.92[ASN][1000 genomes]
rs1347677	0.92[ASN][1000 genomes]
rs1401455	0.81[ASN][1000 genomes]
rs1519119	0.92[ASN][1000 genomes]
rs1519120	0.92[ASN][1000 genomes]
rs1519121	0.92[ASN][1000 genomes]
rs1519122	0.92[ASN][1000 genomes]
rs1519128	0.92[ASN][1000 genomes]
rs1583611	0.92[ASN][1000 genomes]
rs1589197	0.92[ASN][1000 genomes]
rs1595373	0.92[ASN][1000 genomes]
rs1595374	0.92[ASN][1000 genomes]
rs1607481	0.92[ASN][1000 genomes]
rs16932777	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16932862	1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs1829417	0.93[ASN][1000 genomes]
rs1837096	0.93[ASN][1000 genomes]
rs1866110	0.92[ASN][1000 genomes]
rs1898502	0.92[ASN][1000 genomes]
rs1966697	0.83[ASN][1000 genomes]
rs1966698	0.86[ASN][1000 genomes]
rs2028162	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2118363	0.92[ASN][1000 genomes]
rs2164782	0.92[ASN][1000 genomes]
rs2164784	0.92[ASN][1000 genomes]
rs2164785	0.92[ASN][1000 genomes]
rs2196636	0.93[ASN][1000 genomes]
rs2351962	0.92[ASN][1000 genomes]
rs2351963	0.92[ASN][1000 genomes]
rs35540641	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35547484	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3985603	0.90[ASN][1000 genomes]
rs4336994	0.92[ASN][1000 genomes]
rs4628642	0.90[ASN][1000 genomes]
rs4757391	0.90[ASN][1000 genomes]
rs6486284	0.92[ASN][1000 genomes]
rs7111718	0.92[ASN][1000 genomes]
rs7118275	0.92[ASN][1000 genomes]
rs7927191	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7938055	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7949077	0.92[ASN][1000 genomes]
rs7952254	0.92[ASN][1000 genomes]
rs893311	0.80[ASN][1000 genomes]
rs962095	0.92[ASN][1000 genomes]
rs962096	0.92[ASN][1000 genomes]
rs977508	0.92[ASN][1000 genomes]
rs977509	0.85[ASN][1000 genomes]
rs990534	0.92[ASN][1000 genomes]
rs991612	0.92[ASN][1000 genomes]
rs996954	0.92[ASN][1000 genomes]
rs9971406	0.90[ASN][1000 genomes]
rs9971543	0.92[ASN][1000 genomes]
rs997506	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv897012	chr11:16189326-16283644	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv553563	chr11:16206658-16259405	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv897013	chr11:16206658-16307700	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv897014	chr11:16211343-16283644	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv467710	chr11:16219341-16266740	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv553564	chr11:16219341-16266740	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv553565	chr11:16220289-16307700	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv897015	chr11:16235962-16307700	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16224400-16247200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:16238600-16260800	Weak transcription	Psoas Muscle	Psoas
3	chr11:16239600-16248200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:16242600-16245000	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links