Variant report

Variant	rs11023909
Chromosome Location	chr11:16328935-16328936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16327811..16329363-chr11:16626591..16628284,2	K562	blood:
2	chr11:16323818..16325967-chr11:16327666..16329617,2	K562	blood:
3	chr11:16320208..16325267-chr11:16327688..16333055,7	K562	blood:
4	chr11:16328498..16330293-chr11:16349747..16351719,2	K562	blood:

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10430890	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10430891	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10734239	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10741693	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10741694	0.90[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs10741695	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10766309	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10766312	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10766314	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10766315	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10766318	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832558	0.80[CHB][hapmap]
rs10832571	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10832573	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10832575	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10832576	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10832578	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10832579	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10832582	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10832584	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10832585	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10832586	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11023879	0.80[ASN][1000 genomes]
rs11023890	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11023893	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11023897	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11023901	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11023902	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11023906	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023907	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023910	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023912	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11023928	0.85[JPT][hapmap]
rs1155685	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1156725	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11821781	1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs11822790	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12798653	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12798854	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12798980	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12799126	0.94[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12800049	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs12800659	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12801635	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1304640	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1347677	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1401455	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1519119	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1519120	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1519121	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1519122	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1519128	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1583611	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1589197	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1595373	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1595374	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1607481	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16932777	0.93[JPT][hapmap]
rs16932862	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16932899	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1829417	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1829418	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1837096	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1866110	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1898502	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1966697	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1966698	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2014408	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2028162	0.92[JPT][hapmap]
rs2118363	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2164782	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2164784	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2164785	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2196636	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2218001	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2351961	0.81[EUR][1000 genomes]
rs2351962	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2351963	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3985603	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4336994	0.88[ASN][1000 genomes]
rs4628642	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4757391	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6486284	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7101502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7111718	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7113955	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7118275	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7121869	0.83[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7127937	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7131442	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7927191	0.93[JPT][hapmap]
rs7938055	0.93[JPT][hapmap]
rs7949077	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7952254	0.95[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs893311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs962095	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs962096	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs977508	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs977509	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs990534	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs991612	0.93[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs996954	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9971406	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9971543	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs997506	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16315200-16351800	Weak transcription	Fetal Intestine Large	intestine
2	chr11:16319400-16377600	Weak transcription	Psoas Muscle	Psoas
3	chr11:16320600-16340600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:16323000-16330000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:16323200-16330000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:16323400-16330400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:16323600-16330400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:16327800-16342400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:16328600-16348400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links