Variant report

Variant	rs2028162
Chromosome Location	chr11:16247475-16247476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16245998..16247921-chr11:16262395..16264566,2	K562	blood:

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10430890	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs10734239	0.84[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10741693	0.89[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs10741694	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10741695	0.91[ASN][1000 genomes]
rs10766308	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766309	0.92[ASN][1000 genomes]
rs10766312	0.84[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10766314	0.84[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10766315	0.84[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10766318	0.80[ASN][1000 genomes]
rs10832558	1.00[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10832568	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10832571	1.00[ASW][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10832573	1.00[ASW][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs10832575	0.91[ASN][1000 genomes]
rs10832576	0.84[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10832578	0.91[ASN][1000 genomes]
rs10832579	0.84[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10832582	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs10832584	0.84[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10832585	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs10832586	0.84[ASN][1000 genomes]
rs11023871	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11023879	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023890	0.84[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11023893	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11023897	0.89[ASN][1000 genomes]
rs11023901	0.87[ASN][1000 genomes]
rs11023902	0.91[ASN][1000 genomes]
rs11023907	1.00[ASW][hapmap];0.82[CHD][hapmap];0.92[JPT][hapmap]
rs11023909	0.92[JPT][hapmap]
rs11023910	1.00[JPT][hapmap]
rs11023912	1.00[JPT][hapmap]
rs11023928	1.00[JPT][hapmap]
rs1155685	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1156725	0.85[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11821781	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs11822790	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12798653	0.80[ASN][1000 genomes]
rs12798854	1.00[JPT][hapmap]
rs12798980	1.00[ASW][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs12799126	0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs12800049	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12800659	1.00[ASW][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12801635	1.00[ASW][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap]
rs1304640	0.91[ASN][1000 genomes]
rs1347677	0.83[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1401455	0.80[ASN][1000 genomes]
rs1519119	0.91[ASN][1000 genomes]
rs1519120	0.91[ASN][1000 genomes]
rs1519121	0.91[ASN][1000 genomes]
rs1519122	0.84[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1519128	0.91[ASN][1000 genomes]
rs1583611	0.91[ASN][1000 genomes]
rs1589197	0.91[ASN][1000 genomes]
rs1595373	0.84[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1595374	0.91[ASN][1000 genomes]
rs1607481	0.91[ASN][1000 genomes]
rs16932777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932862	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs16932899	1.00[JPT][hapmap]
rs1829417	0.84[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1837096	0.84[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1866110	0.91[ASN][1000 genomes]
rs1898502	0.91[ASN][1000 genomes]
rs1966697	0.82[ASN][1000 genomes]
rs1966698	0.85[ASN][1000 genomes]
rs2014408	1.00[ASW][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs2118363	0.91[ASN][1000 genomes]
rs2164782	0.91[ASN][1000 genomes]
rs2164784	0.84[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2164785	0.84[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2196636	0.92[ASN][1000 genomes]
rs2218001	1.00[JPT][hapmap]
rs2351962	0.84[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2351963	0.91[ASN][1000 genomes]
rs35540641	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35547484	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3985603	0.84[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4336994	0.91[ASN][1000 genomes]
rs4628642	0.84[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4757391	0.84[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6486284	0.91[ASN][1000 genomes]
rs7101502	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs7111718	0.91[ASN][1000 genomes]
rs7118275	0.91[ASN][1000 genomes]
rs7927191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938055	0.95[CEU][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949077	0.83[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7952254	0.83[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs893311	0.92[JPT][hapmap]
rs962095	0.84[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs962096	0.91[ASN][1000 genomes]
rs977508	0.91[ASN][1000 genomes]
rs977509	0.85[ASN][1000 genomes]
rs990534	0.91[ASN][1000 genomes]
rs991612	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs996954	0.91[ASN][1000 genomes]
rs9971406	0.89[ASN][1000 genomes]
rs9971543	0.91[ASN][1000 genomes]
rs997506	0.84[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv897012	chr11:16189326-16283644	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv553563	chr11:16206658-16259405	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv897013	chr11:16206658-16307700	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv897014	chr11:16211343-16283644	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv467710	chr11:16219341-16266740	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv553564	chr11:16219341-16266740	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv553565	chr11:16220289-16307700	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv897015	chr11:16235962-16307700	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16238600-16260800	Weak transcription	Psoas Muscle	Psoas
2	chr11:16239600-16248200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:16246600-16258600	Weak transcription	Fetal Intestine Large	intestine
4	chr11:16247000-16248400	Enhancers	Duodenum Mucosa	Duodenum
5	chr11:16247000-16248400	Enhancers	Fetal Heart	heart
6	chr11:16247200-16247800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr11:16247200-16248200	Enhancers	Liver	Liver
8	chr11:16247200-16248400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:16247200-16248600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:16247200-16248600	Enhancers	A549	lung
11	chr11:16247400-16248400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:16247400-16248400	Enhancers	HUVEC	blood vessel

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