Variant report

Variant	rs10766308
Chromosome Location	chr11:16249659-16249660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16248287..16249803-chr11:16256816..16258558,2	K562	blood:

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10430890	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10734239	0.91[ASN][1000 genomes]
rs10741693	0.91[ASN][1000 genomes]
rs10741694	0.90[ASN][1000 genomes]
rs10741695	0.91[ASN][1000 genomes]
rs10766309	0.92[ASN][1000 genomes]
rs10766312	0.91[ASN][1000 genomes]
rs10766314	0.91[ASN][1000 genomes]
rs10766315	0.91[ASN][1000 genomes]
rs10766318	0.80[ASN][1000 genomes]
rs10832558	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10832568	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10832571	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10832573	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10832575	0.91[ASN][1000 genomes]
rs10832576	0.91[ASN][1000 genomes]
rs10832578	0.91[ASN][1000 genomes]
rs10832579	0.91[ASN][1000 genomes]
rs10832582	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10832584	0.91[ASN][1000 genomes]
rs10832585	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10832586	0.84[ASN][1000 genomes]
rs11023871	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11023879	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023890	0.91[ASN][1000 genomes]
rs11023893	0.91[ASN][1000 genomes]
rs11023897	0.89[ASN][1000 genomes]
rs11023901	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11023902	0.91[ASN][1000 genomes]
rs1155685	0.80[ASN][1000 genomes]
rs1156725	0.80[ASN][1000 genomes]
rs11822790	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12798653	0.80[ASN][1000 genomes]
rs12798980	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12799126	0.80[ASN][1000 genomes]
rs12800049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12800659	0.80[ASN][1000 genomes]
rs1304640	0.91[ASN][1000 genomes]
rs1347677	0.91[ASN][1000 genomes]
rs1401455	0.80[ASN][1000 genomes]
rs1519119	0.91[ASN][1000 genomes]
rs1519120	0.91[ASN][1000 genomes]
rs1519121	0.91[ASN][1000 genomes]
rs1519122	0.91[ASN][1000 genomes]
rs1519128	0.91[ASN][1000 genomes]
rs1583611	0.91[ASN][1000 genomes]
rs1589197	0.91[ASN][1000 genomes]
rs1595373	0.91[ASN][1000 genomes]
rs1595374	0.91[ASN][1000 genomes]
rs1607481	0.91[ASN][1000 genomes]
rs16932777	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932862	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1829417	0.92[ASN][1000 genomes]
rs1837096	0.92[ASN][1000 genomes]
rs1866110	0.91[ASN][1000 genomes]
rs1898502	0.91[ASN][1000 genomes]
rs1966697	0.82[ASN][1000 genomes]
rs1966698	0.85[ASN][1000 genomes]
rs2028162	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118363	0.91[ASN][1000 genomes]
rs2164782	0.91[ASN][1000 genomes]
rs2164784	0.91[ASN][1000 genomes]
rs2164785	0.91[ASN][1000 genomes]
rs2196636	0.92[ASN][1000 genomes]
rs2351962	0.91[ASN][1000 genomes]
rs2351963	0.91[ASN][1000 genomes]
rs35540641	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35547484	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3985603	0.90[ASN][1000 genomes]
rs4336994	0.91[ASN][1000 genomes]
rs4628642	0.90[ASN][1000 genomes]
rs4757391	0.89[ASN][1000 genomes]
rs6486284	0.91[ASN][1000 genomes]
rs7111718	0.91[ASN][1000 genomes]
rs7118275	0.91[ASN][1000 genomes]
rs7927191	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938055	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949077	0.91[ASN][1000 genomes]
rs7952254	0.91[ASN][1000 genomes]
rs962095	0.91[ASN][1000 genomes]
rs962096	0.91[ASN][1000 genomes]
rs977508	0.91[ASN][1000 genomes]
rs977509	0.85[ASN][1000 genomes]
rs990534	0.91[ASN][1000 genomes]
rs991612	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs996954	0.91[ASN][1000 genomes]
rs9971406	0.89[ASN][1000 genomes]
rs9971543	0.91[ASN][1000 genomes]
rs997506	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv897012	chr11:16189326-16283644	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv553563	chr11:16206658-16259405	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv897013	chr11:16206658-16307700	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv897014	chr11:16211343-16283644	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv467710	chr11:16219341-16266740	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv553564	chr11:16219341-16266740	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv553565	chr11:16220289-16307700	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv897015	chr11:16235962-16307700	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16238600-16260800	Weak transcription	Psoas Muscle	Psoas
2	chr11:16246600-16258600	Weak transcription	Fetal Intestine Large	intestine
3	chr11:16248200-16260600	Weak transcription	Fetal Lung	lung
4	chr11:16248200-16274200	Weak transcription	Pancreas	Pancrea
5	chr11:16248400-16254400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:16248400-16259000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:16248400-16260400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:16248600-16257600	Weak transcription	Fetal Intestine Small	intestine
9	chr11:16248600-16258400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:16248600-16259000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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