Variant report

Variant	rs11023833
Chromosome Location	chr11:16056127-16056128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16051749..16054417-chr11:16055912..16059434,4	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10741687	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs10741689	0.96[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10766291	0.92[CEU][hapmap]
rs10766292	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs10766293	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs10766294	0.96[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10766295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10766298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs10766300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs10766301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10832541	0.81[CEU][hapmap]
rs10832542	0.81[CEU][hapmap]
rs10832543	0.92[CEU][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs10832544	0.81[EUR][1000 genomes]
rs10832545	0.88[EUR][1000 genomes]
rs10832551	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs10832553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10832554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10832555	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11023815	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs11023819	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs11023820	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs11023821	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs11023823	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11023826	0.96[CEU][hapmap];0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11023860	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11023879	1.00[YRI][hapmap]
rs11602209	0.87[EUR][1000 genomes]
rs12276728	0.82[CEU][hapmap]
rs12278364	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1356647	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1378305	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1455104	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1455106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1455109	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1455111	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1455115	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1455117	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1914875	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1949482	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1949483	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2124202	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3903292	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3922559	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs4335501	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs4335502	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs4342995	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs4437995	0.96[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4539287	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs4756841	1.00[YRI][hapmap]
rs4756842	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs4757378	0.93[CEU][hapmap]
rs4757379	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs4757380	0.96[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6486278	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7108091	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7111279	0.81[EUR][1000 genomes]
rs7118395	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7926424	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7931734	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7947265	0.93[CEU][hapmap];0.80[EUR][1000 genomes]
rs7950736	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9645647	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs9645648	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs978294	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1045933	chr11:16023805-16067955	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16024400-16067200	Weak transcription	Liver	Liver
2	chr11:16024800-16088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:16034200-16079200	Weak transcription	Pancreas	Pancrea
4	chr11:16035000-16057400	Weak transcription	Fetal Intestine Small	intestine
5	chr11:16036000-16073800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:16037600-16081200	Weak transcription	Psoas Muscle	Psoas
7	chr11:16038200-16059200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:16038200-16065000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:16038200-16067200	Weak transcription	Fetal Muscle Leg	muscle
10	chr11:16039000-16059000	Weak transcription	Aorta	Aorta
11	chr11:16042000-16057400	Weak transcription	Left Ventricle	heart
12	chr11:16043000-16102000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:16050000-16076200	Weak transcription	Fetal Kidney	kidney
14	chr11:16051000-16072400	Weak transcription	Esophagus	oesophagus
15	chr11:16053600-16061600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:16054200-16066800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr11:16054800-16056200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:16054800-16062800	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr11:16055000-16064800	Weak transcription	Fetal Intestine Large	intestine
20	chr11:16055600-16056400	Enhancers	Fetal Heart	heart
21	chr11:16055800-16056600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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