Variant report

Variant	rs4237711
Chromosome Location	chr11:16003297-16003298
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:15993560..15998365-chr11:15999415..16005158,8	K562	blood:
2	chr11:15998751..16000447-chr11:16002065..16003665,2	K562	blood:
3	chr11:15998677..16000251-chr11:16002165..16003933,2	K562	blood:
4	chr11:15993560..15995587-chr11:16001386..16003800,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10832541	0.81[JPT][hapmap]
rs10832542	0.82[JPT][hapmap]
rs12276728	0.82[JPT][hapmap]
rs4539287	0.81[JPT][hapmap]
rs4756842	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4237711	KCNC1	cis	cerebellum	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15990400-16011600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:15991600-16006600	Weak transcription	Liver	Liver
3	chr11:15991800-16006800	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:15992400-16006600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:15992600-16006800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:15993000-16006800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:15993000-16010600	Weak transcription	Pancreas	Pancrea
8	chr11:15993000-16012800	Weak transcription	Right Ventricle	heart
9	chr11:15993200-16009600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:15993200-16010400	Weak transcription	Left Ventricle	heart
11	chr11:15993600-16006600	Weak transcription	Fetal Intestine Small	intestine
12	chr11:15995400-16006800	Weak transcription	Fetal Intestine Large	intestine
13	chr11:15997800-16006600	Weak transcription	Fetal Lung	lung
14	chr11:15998200-16011600	Weak transcription	Aorta	Aorta
15	chr11:15999200-16006600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:15999200-16009800	Weak transcription	Psoas Muscle	Psoas
17	chr11:15999400-16006400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:15999400-16022800	Weak transcription	K562	blood
19	chr11:15999600-16007400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr11:15999600-16009800	Weak transcription	Fetal Heart	heart
21	chr11:16001800-16010400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:16003000-16008600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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