Variant report

Variant	rs11023894
Chromosome Location	chr11:16284616-16284617
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16277289..16281774-chr11:16284462..16288431,5	K562	blood:
2	chr11:16273763..16275411-chr11:16283126..16284650,2	K562	blood:

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10219384	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10500828	0.85[JPT][hapmap]
rs10500829	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10741696	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10766303	0.85[JPT][hapmap]
rs10766304	0.81[JPT][hapmap]
rs10766305	0.81[JPT][hapmap]
rs10832561	0.82[JPT][hapmap]
rs10832565	0.85[JPT][hapmap]
rs10832566	0.85[JPT][hapmap]
rs10832567	0.85[JPT][hapmap]
rs10832577	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10832580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832587	0.97[ASN][1000 genomes]
rs10832591	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10832592	1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10832593	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10832594	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11023875	0.82[JPT][hapmap]
rs11023882	0.85[JPT][hapmap]
rs11023898	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11023904	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11023913	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11023917	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12271339	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12274377	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12281119	0.82[JPT][hapmap]
rs12420519	0.85[JPT][hapmap]
rs1401454	0.85[JPT][hapmap]
rs1519123	0.82[JPT][hapmap]
rs1519126	0.90[JPT][hapmap]
rs1607480	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1837095	0.82[JPT][hapmap]
rs190929	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1949481	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs2118361	0.81[JPT][hapmap]
rs2351964	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2917899	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs297342	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs297344	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs297359	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs297365	1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs297366	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4757388	0.97[ASN][1000 genomes]
rs4757390	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs4757392	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs588470	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7109206	1.00[ASN][1000 genomes]
rs722746	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs961002	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv897013	chr11:16206658-16307700	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv553565	chr11:16220289-16307700	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv897015	chr11:16235962-16307700	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3414577	chr11:16270425-16298158	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16271400-16289200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:16271800-16286400	Weak transcription	Psoas Muscle	Psoas
3	chr11:16279600-16300400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:16283600-16285000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:16283600-16285200	Enhancers	Liver	Liver
6	chr11:16283800-16285200	Enhancers	Duodenum Mucosa	Duodenum
7	chr11:16283800-16285200	Enhancers	Fetal Heart	heart
8	chr11:16284000-16285000	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr11:16284400-16285200	Enhancers	HepG2	liver

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