Variant report

Variant	rs1837095
Chromosome Location	chr11:16245692-16245693
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1013304	0.84[CHB][hapmap];0.96[JPT][hapmap];0.81[YRI][hapmap];0.89[ASN][1000 genomes]
rs10219384	0.86[JPT][hapmap]
rs10430835	0.83[ASN][1000 genomes]
rs10500828	0.83[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs10500829	0.87[JPT][hapmap]
rs10741696	0.82[JPT][hapmap]
rs10766302	0.86[ASN][1000 genomes]
rs10766303	0.83[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs10766304	0.83[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.86[ASN][1000 genomes]
rs10766305	0.83[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap];0.86[ASN][1000 genomes]
rs10766306	0.86[ASN][1000 genomes]
rs10832559	0.86[ASN][1000 genomes]
rs10832560	0.86[ASN][1000 genomes]
rs10832561	0.84[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.86[ASN][1000 genomes]
rs10832562	0.86[ASN][1000 genomes]
rs10832563	0.86[ASN][1000 genomes]
rs10832564	0.86[ASN][1000 genomes]
rs10832565	0.83[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs10832566	0.83[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs10832567	0.83[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs10832569	0.96[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs10832570	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10832577	0.87[JPT][hapmap]
rs10832591	0.87[JPT][hapmap]
rs10832592	0.87[JPT][hapmap]
rs10832593	0.91[JPT][hapmap]
rs10832594	0.87[JPT][hapmap]
rs11023873	0.84[ASN][1000 genomes]
rs11023874	0.80[ASN][1000 genomes]
rs11023875	0.84[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.86[ASN][1000 genomes]
rs11023881	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023882	0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs11023894	0.82[JPT][hapmap]
rs11023917	0.87[JPT][hapmap]
rs12271339	0.89[JPT][hapmap]
rs12274377	0.87[JPT][hapmap]
rs12281119	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12420519	0.83[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs1401454	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519123	0.84[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.86[ASN][1000 genomes]
rs1519124	0.86[ASN][1000 genomes]
rs1519125	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1519126	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1561259	0.83[ASN][1000 genomes]
rs1607480	0.87[JPT][hapmap]
rs190929	0.91[JPT][hapmap]
rs1949481	0.91[JPT][hapmap]
rs2030291	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2118361	0.82[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs2164781	0.83[ASN][1000 genomes]
rs2351958	1.00[CEU][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351964	0.91[JPT][hapmap]
rs297342	0.91[JPT][hapmap]
rs297344	0.87[JPT][hapmap]
rs297366	0.86[JPT][hapmap]
rs4757390	0.87[JPT][hapmap]
rs4757392	0.87[JPT][hapmap]
rs588470	0.87[JPT][hapmap]
rs961002	0.84[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv897012	chr11:16189326-16283644	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv553563	chr11:16206658-16259405	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv897013	chr11:16206658-16307700	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv897014	chr11:16211343-16283644	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv467710	chr11:16219341-16266740	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv553564	chr11:16219341-16266740	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv553565	chr11:16220289-16307700	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv897015	chr11:16235962-16307700	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16224400-16247200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:16238600-16260800	Weak transcription	Psoas Muscle	Psoas
3	chr11:16239600-16248200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:16245400-16246200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:16245400-16247400	Weak transcription	HUVEC	blood vessel

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