Variant report

Variant	rs10832569
Chromosome Location	chr11:16249453-16249454
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16248287..16249803-chr11:16256816..16258558,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1013304	0.92[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10430835	0.86[EUR][1000 genomes]
rs10500828	0.92[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs10766302	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10766303	0.92[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10766304	0.92[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10766305	0.91[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10766306	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10832559	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10832560	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10832561	0.92[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10832562	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10832563	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10832564	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10832565	0.92[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10832566	0.92[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10832567	0.92[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10832570	0.91[ASN][1000 genomes]
rs10832593	0.81[JPT][hapmap]
rs11023873	0.85[EUR][1000 genomes]
rs11023874	0.83[EUR][1000 genomes]
rs11023875	0.92[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11023881	0.94[ASN][1000 genomes]
rs11023882	0.81[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12281119	0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12420519	0.92[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs1401454	1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs1519123	0.92[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1519124	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1519125	0.95[ASN][1000 genomes]
rs1519126	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1561259	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs1837095	0.96[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs190929	0.81[JPT][hapmap]
rs1949481	0.81[JPT][hapmap]
rs2030291	0.93[ASN][1000 genomes]
rs2118361	0.92[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2164781	0.86[EUR][1000 genomes]
rs2351956	0.87[EUR][1000 genomes]
rs2351958	0.95[ASN][1000 genomes]
rs2351964	0.81[JPT][hapmap]
rs297342	0.81[JPT][hapmap]
rs961002	0.92[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv897012	chr11:16189326-16283644	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv553563	chr11:16206658-16259405	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv897013	chr11:16206658-16307700	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv897014	chr11:16211343-16283644	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv467710	chr11:16219341-16266740	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv553564	chr11:16219341-16266740	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv553565	chr11:16220289-16307700	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv897015	chr11:16235962-16307700	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16238600-16260800	Weak transcription	Psoas Muscle	Psoas
2	chr11:16246600-16258600	Weak transcription	Fetal Intestine Large	intestine
3	chr11:16248200-16260600	Weak transcription	Fetal Lung	lung
4	chr11:16248200-16274200	Weak transcription	Pancreas	Pancrea
5	chr11:16248400-16254400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:16248400-16259000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:16248400-16260400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:16248600-16257600	Weak transcription	Fetal Intestine Small	intestine
9	chr11:16248600-16258400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:16248600-16259000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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