Variant report

Variant	rs2351958
Chromosome Location	chr11:16248020-16248021
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1013304	0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10430835	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10500828	0.80[YRI][hapmap];0.83[ASN][1000 genomes]
rs10766302	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10766303	0.86[ASN][1000 genomes]
rs10766304	0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10766305	0.86[YRI][hapmap];0.86[ASN][1000 genomes]
rs10766306	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10832559	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10832560	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10832561	0.81[YRI][hapmap];0.86[ASN][1000 genomes]
rs10832562	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10832563	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10832564	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10832565	0.80[YRI][hapmap];0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10832566	0.80[YRI][hapmap];0.86[ASN][1000 genomes]
rs10832567	0.80[YRI][hapmap];0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10832569	0.95[ASN][1000 genomes]
rs10832570	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11023873	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11023874	0.80[ASN][1000 genomes]
rs11023875	0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11023881	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023882	0.92[ASN][1000 genomes]
rs12281119	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12420519	0.80[YRI][hapmap];0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1401454	1.00[CEU][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519123	0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1519124	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1519125	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1519126	0.80[YRI][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1561259	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1837095	1.00[CEU][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030291	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2118361	0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2164781	0.83[ASN][1000 genomes]
rs961002	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv897012	chr11:16189326-16283644	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv553563	chr11:16206658-16259405	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv897013	chr11:16206658-16307700	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv897014	chr11:16211343-16283644	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv467710	chr11:16219341-16266740	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv553564	chr11:16219341-16266740	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv553565	chr11:16220289-16307700	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv897015	chr11:16235962-16307700	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16238600-16260800	Weak transcription	Psoas Muscle	Psoas
2	chr11:16239600-16248200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:16246600-16258600	Weak transcription	Fetal Intestine Large	intestine
4	chr11:16247000-16248400	Enhancers	Duodenum Mucosa	Duodenum
5	chr11:16247000-16248400	Enhancers	Fetal Heart	heart
6	chr11:16247200-16248200	Enhancers	Liver	Liver
7	chr11:16247200-16248400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:16247200-16248600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr11:16247200-16248600	Enhancers	A549	lung
10	chr11:16247400-16248400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:16247400-16248400	Enhancers	HUVEC	blood vessel
12	chr11:16247600-16248200	Enhancers	Fetal Lung	lung
13	chr11:16247800-16248200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:16247800-16248200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:16247800-16248200	Enhancers	Pancreas	Pancrea
16	chr11:16247800-16248200	Enhancers	HepG2	liver
17	chr11:16247800-16248200	Enhancers	NHEK	skin
18	chr11:16247800-16248400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:16247800-16248600	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr11:16248000-16248200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:16248000-16248200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:16248000-16248200	Enhancers	K562	blood
23	chr11:16248000-16248400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:16248000-16248400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr11:16248000-16248400	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr11:16248000-16248400	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr11:16248000-16248600	Enhancers	Fetal Intestine Small	intestine
28	chr11:16248000-16249200	Enhancers	Stomach Mucosa	stomach

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