Variant report

Variant	rs2030291
Chromosome Location	chr11:16251251-16251252
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16240077..16244324-chr11:16251034..16255034,5	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1013304	0.87[ASN][1000 genomes]
rs10430835	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10500828	0.81[ASN][1000 genomes]
rs10766302	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10766303	0.84[ASN][1000 genomes]
rs10766304	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10766305	0.84[ASN][1000 genomes]
rs10766306	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10832559	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10832560	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10832561	0.84[ASN][1000 genomes]
rs10832562	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10832563	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10832564	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10832565	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10832566	0.84[ASN][1000 genomes]
rs10832567	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10832569	0.93[ASN][1000 genomes]
rs10832570	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11023873	0.82[ASN][1000 genomes]
rs11023875	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11023881	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023882	0.90[ASN][1000 genomes]
rs12281119	0.98[ASN][1000 genomes]
rs12420519	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1401454	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1519123	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1519124	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1519125	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1519126	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1561259	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1837095	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2118361	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2164781	0.81[ASN][1000 genomes]
rs2351958	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv897012	chr11:16189326-16283644	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv553563	chr11:16206658-16259405	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv897013	chr11:16206658-16307700	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv897014	chr11:16211343-16283644	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv467710	chr11:16219341-16266740	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv553564	chr11:16219341-16266740	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv553565	chr11:16220289-16307700	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv897015	chr11:16235962-16307700	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16238600-16260800	Weak transcription	Psoas Muscle	Psoas
2	chr11:16246600-16258600	Weak transcription	Fetal Intestine Large	intestine
3	chr11:16248200-16260600	Weak transcription	Fetal Lung	lung
4	chr11:16248200-16274200	Weak transcription	Pancreas	Pancrea
5	chr11:16248400-16254400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:16248400-16259000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:16248400-16260400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:16248600-16257600	Weak transcription	Fetal Intestine Small	intestine
9	chr11:16248600-16258400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:16248600-16259000	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links