Variant report

Variant	rs11024060
Chromosome Location	chr11:16881961-16881962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10766352	0.80[TSI][hapmap]
rs10766357	0.82[ASN][1000 genomes]
rs10832694	0.90[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.91[ASN][1000 genomes]
rs11024063	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11024066	0.86[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1860271	0.81[ASN][1000 genomes]
rs7109209	0.86[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs740624	0.82[TSI][hapmap]
rs991606	0.84[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11024060	INSC	cis	cerebellum	SCAN

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16853400-16883800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr11:16863400-16882000	Weak transcription	Stomach Mucosa	stomach
3	chr11:16863800-16884800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:16863800-16892600	Weak transcription	Fetal Kidney	kidney
5	chr11:16864200-16882000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:16867800-16885000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:16872000-16895800	Weak transcription	Aorta	Aorta
8	chr11:16872200-16882200	Weak transcription	Brain Angular Gyrus	brain
9	chr11:16872200-16884400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr11:16872600-16889600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:16872800-16883800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr11:16876000-16883800	Weak transcription	Fetal Brain Female	brain
13	chr11:16876200-16888400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:16876400-16883600	Weak transcription	Spleen	Spleen
15	chr11:16876600-16884000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:16876600-16889800	Weak transcription	Adipose Nuclei	Adipose
17	chr11:16876600-16890800	Weak transcription	Colonic Mucosa	Colon
18	chr11:16876800-16898600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr11:16877800-16883800	Weak transcription	Brain Germinal Matrix	brain
20	chr11:16877800-16890000	Weak transcription	Lung	lung
21	chr11:16877800-16892200	Weak transcription	Fetal Stomach	stomach
22	chr11:16877800-16899600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr11:16878000-16889400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr11:16878200-16883800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:16878400-16883400	Weak transcription	Brain Substantia Nigra	brain
26	chr11:16878600-16882200	Weak transcription	Brain Anterior Caudate	brain
27	chr11:16878800-16890000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr11:16879000-16883600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:16879000-16884200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr11:16879000-16887600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr11:16879200-16882000	Weak transcription	Esophagus	oesophagus
32	chr11:16879200-16882000	Weak transcription	Ovary	ovary
33	chr11:16879200-16882000	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr11:16879200-16883000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:16879200-16884000	Weak transcription	Liver	Liver
36	chr11:16879400-16885000	Enhancers	K562	blood
37	chr11:16880400-16882400	Enhancers	Left Ventricle	heart
38	chr11:16880400-16883800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr11:16880400-16885200	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr11:16880400-16885800	Enhancers	Fetal Muscle Leg	muscle
41	chr11:16880600-16882200	Enhancers	HMEC	breast
42	chr11:16880600-16882400	Enhancers	HepG2	liver
43	chr11:16881000-16882200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr11:16881000-16884600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:16881200-16882200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr11:16881400-16882000	Weak transcription	Right Atrium	heart
47	chr11:16881400-16882400	Enhancers	Gastric	stomach
48	chr11:16881400-16882600	Flanking Active TSS	Fetal Heart	heart
49	chr11:16881400-16883000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr11:16881400-16883000	Weak transcription	Fetal Muscle Trunk	muscle

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