Variant report

Variant	rs7109209
Chromosome Location	chr11:16924324-16924325
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16924323..16927618-chr11:16930447..16932852,3	K562	blood:
2	chr11:16914855..16917197-chr11:16922400..16924904,3	MCF-7	breast:
3	chr11:16924323..16927213-chr11:16930206..16932852,3	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10766357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766358	0.91[CEU][hapmap];0.91[GIH][hapmap]
rs10832694	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.82[MKK][hapmap];0.90[TSI][hapmap];0.90[ASN][1000 genomes]
rs10832698	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10832701	0.81[EUR][1000 genomes]
rs11024060	0.86[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs11024063	0.86[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs11024066	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11024076	0.95[CEU][hapmap];0.86[CHB][hapmap];0.82[EUR][1000 genomes]
rs1860271	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2079235	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7688	chr11:16912759-16939804	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2757425	chr11:16915291-16934130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759805	chr11:16915291-16934130	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1038987	chr11:16916438-16927022	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2754709	chr11:16917219-16927022	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16914000-16927400	Weak transcription	HSMMtube	muscle
2	chr11:16916000-16924400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:16916000-16931000	Weak transcription	Spleen	Spleen
4	chr11:16918200-16924800	Weak transcription	Colonic Mucosa	Colon
5	chr11:16919400-16927000	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:16919600-16925400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:16919800-16933600	Weak transcription	Fetal Kidney	kidney
8	chr11:16920000-16924400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:16920400-16924600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:16920400-16927000	Weak transcription	Right Atrium	heart
11	chr11:16921600-16927000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:16921600-16927200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:16921800-16924800	Weak transcription	Left Ventricle	heart
14	chr11:16921800-16926600	Weak transcription	Gastric	stomach
15	chr11:16921800-16926600	Weak transcription	Pancreas	Pancrea
16	chr11:16921800-16927000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:16922000-16934000	Weak transcription	HepG2	liver
18	chr11:16922200-16927200	Weak transcription	Fetal Lung	lung
19	chr11:16922800-16925600	Enhancers	HMEC	breast
20	chr11:16923000-16924800	Enhancers	Duodenum Mucosa	Duodenum
21	chr11:16923000-16925800	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr11:16923000-16926000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:16923200-16924400	Enhancers	Small Intestine	intestine
24	chr11:16923200-16925800	Enhancers	Primary B cells from peripheral blood	blood
25	chr11:16923400-16925000	Enhancers	Muscle Satellite Cultured Cells	--
26	chr11:16923400-16925000	Enhancers	NHEK	skin
27	chr11:16923400-16925600	Flanking Active TSS	GM12878-XiMat	blood
28	chr11:16923400-16926000	Enhancers	Stomach Mucosa	stomach
29	chr11:16923400-16927400	Enhancers	Fetal Intestine Large	intestine
30	chr11:16923600-16924400	Enhancers	HUVEC	blood vessel
31	chr11:16923600-16924800	Enhancers	A549	lung
32	chr11:16923600-16925400	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr11:16923600-16925600	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr11:16923600-16925800	Enhancers	Fetal Intestine Small	intestine
35	chr11:16923800-16927800	Enhancers	Fetal Heart	heart
36	chr11:16924000-16924600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr11:16924000-16924800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr11:16924200-16924400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr11:16924200-16924600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:16924200-16925000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr11:16924200-16925000	Enhancers	Adipose Nuclei	Adipose
42	chr11:16924200-16925400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:16924200-16925600	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr11:16924200-16926600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:16924200-16927200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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