Variant report

Variant	rs10766358
Chromosome Location	chr11:16934149-16934150
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16932846..16935000-chr11:16942811..16944331,2	MCF-7	breast:
2	chr11:16931101..16934600-chr11:16936301..16938112,4	K562	blood:
3	chr11:16831644..16833328-chr11:16933413..16935147,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10766357	0.81[EUR][1000 genomes]
rs10832694	0.82[CEU][hapmap];0.83[GIH][hapmap]
rs10832698	0.82[EUR][1000 genomes]
rs10832701	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11024066	0.91[CEU][hapmap];0.90[GIH][hapmap];0.90[MEX][hapmap]
rs11024076	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12577088	1.00[YRI][hapmap]
rs1860271	0.83[EUR][1000 genomes]
rs2079235	0.82[EUR][1000 genomes]
rs41515852	1.00[YRI][hapmap]
rs7109209	0.91[CEU][hapmap];0.91[GIH][hapmap]
rs7129155	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7688	chr11:16912759-16939804	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16925200-16939800	Weak transcription	Colonic Mucosa	Colon
2	chr11:16925600-16939800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:16927400-16934800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:16927600-16934200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:16927600-16939200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:16927800-16939400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:16927800-16944400	Weak transcription	A549	lung
8	chr11:16929800-16935200	Enhancers	Stomach Mucosa	stomach
9	chr11:16930800-16934600	Enhancers	Duodenum Mucosa	Duodenum
10	chr11:16931200-16934200	Weak transcription	Spleen	Spleen
11	chr11:16931400-16944200	Weak transcription	Esophagus	oesophagus
12	chr11:16932200-16934200	Weak transcription	Left Ventricle	heart
13	chr11:16932200-16934400	Weak transcription	Right Atrium	heart
14	chr11:16932600-16935400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:16932800-16934600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr11:16932800-16935400	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr11:16933000-16934400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr11:16933000-16939200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:16933200-16939000	Weak transcription	HMEC	breast
20	chr11:16933400-16934400	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr11:16933400-16936800	Enhancers	Fetal Heart	heart
22	chr11:16933600-16934600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:16933600-16934600	Enhancers	Fetal Kidney	kidney
24	chr11:16933600-16935000	Enhancers	Adipose Nuclei	Adipose
25	chr11:16933600-16935200	Enhancers	Brain Germinal Matrix	brain
26	chr11:16933800-16934400	Weak transcription	Brain Anterior Caudate	brain
27	chr11:16933800-16934600	Enhancers	Lung	lung
28	chr11:16933800-16935000	Enhancers	Right Ventricle	heart
29	chr11:16934000-16934200	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr11:16934000-16934600	Enhancers	Fetal Intestine Large	intestine
31	chr11:16934000-16934600	Enhancers	HepG2	liver
32	chr11:16934000-16935000	Enhancers	Gastric	stomach
33	chr11:16934000-16935200	Genic enhancers	Fetal Intestine Small	intestine
34	chr11:16934000-16935200	Enhancers	Pancreas	Pancrea
35	chr11:16934000-16935400	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr11:16934000-16935400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:16934000-16935600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr11:16934000-16936200	Enhancers	H1 Cell Line	embryonic stem cell

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