Variant report

Variant	rs41515852
Chromosome Location	chr11:16893345-16893346
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16878202..16880013-chr11:16893288..16895132,2	K562	blood:
2	chr11:16892971..16895471-chr11:17099061..17100844,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110700	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10766358	1.00[YRI][hapmap]
rs12577088	1.00[YRI][hapmap]
rs72864051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16872000-16895800	Weak transcription	Aorta	Aorta
2	chr11:16876800-16898600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:16877800-16899600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr11:16882400-16894800	Weak transcription	Pancreas	Pancrea
5	chr11:16882400-16895800	Weak transcription	Gastric	stomach
6	chr11:16882600-16898400	Weak transcription	Ovary	ovary
7	chr11:16884600-16897600	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:16884800-16897600	Weak transcription	Brain Anterior Caudate	brain
9	chr11:16884800-16900000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:16885000-16900200	Weak transcription	Stomach Mucosa	stomach
11	chr11:16885200-16894000	Weak transcription	Left Ventricle	heart
12	chr11:16885200-16894800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:16885200-16894800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:16885200-16902400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:16885400-16894800	Weak transcription	Right Ventricle	heart
16	chr11:16885400-16900800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:16890200-16895600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:16890200-16897600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr11:16890400-16899000	Weak transcription	Adipose Nuclei	Adipose
20	chr11:16891000-16893600	Enhancers	HSMMtube	muscle
21	chr11:16891000-16894200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr11:16891000-16900000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr11:16891000-16900800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr11:16891000-16901000	Weak transcription	Lung	lung
25	chr11:16891200-16904600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr11:16891600-16894000	Enhancers	HSMM	muscle
27	chr11:16891600-16897600	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr11:16891600-16903600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr11:16891800-16895600	Weak transcription	HepG2	liver
30	chr11:16891800-16895800	Weak transcription	Fetal Intestine Large	intestine
31	chr11:16891800-16899200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:16892000-16896000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr11:16892000-16897400	Weak transcription	Placenta	Placenta
34	chr11:16892200-16893400	Enhancers	Fetal Stomach	stomach
35	chr11:16892200-16895600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr11:16892200-16896200	Weak transcription	Liver	Liver
37	chr11:16892400-16893400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:16892400-16894000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:16892600-16893400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr11:16892600-16893400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:16892600-16893800	Enhancers	HMEC	breast
42	chr11:16892800-16893400	Enhancers	Muscle Satellite Cultured Cells	--
43	chr11:16892800-16893400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:16892800-16893600	Enhancers	Osteobl	bone
45	chr11:16892800-16894200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr11:16892800-16896200	Weak transcription	Esophagus	oesophagus
47	chr11:16892800-16898400	Enhancers	Fetal Heart	heart
48	chr11:16893000-16895800	Weak transcription	Fetal Intestine Small	intestine
49	chr11:16893000-16897200	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr11:16893200-16893400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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