Variant report

Variant	rs11024284
Chromosome Location	chr11:17444590-17444591
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2299638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299640	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4148624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756888	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs929235	1.00[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17418600-17453600	Weak transcription	Fetal Brain Female	brain
2	chr11:17428200-17450200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:17435200-17460600	Weak transcription	Right Atrium	heart
4	chr11:17437400-17445000	Weak transcription	Pancreas	Pancrea
5	chr11:17437800-17448000	Enhancers	Dnd41	blood
6	chr11:17442800-17451200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:17443000-17448000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:17443600-17444800	Weak transcription	Fetal Intestine Small	intestine
9	chr11:17443600-17458000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:17443800-17445000	Weak transcription	Fetal Thymus	thymus
11	chr11:17443800-17448600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:17443800-17462600	Weak transcription	Brain Substantia Nigra	brain
13	chr11:17444000-17450800	Weak transcription	Psoas Muscle	Psoas
14	chr11:17444200-17446000	Weak transcription	Brain Anterior Caudate	brain
15	chr11:17444200-17452200	Weak transcription	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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