Variant report

Variant	rs4756888
Chromosome Location	chr11:17442658-17442659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:17437268..17438845-chr11:17442068..17444697,2	K562	blood:
2	chr11:17440734..17443682-chr11:17450301..17453039,2	K562	blood:
3	chr11:17431085..17433114-chr11:17442252..17444693,2	K562	blood:
4	chr11:17438853..17441304-chr11:17442560..17445643,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11024284	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299638	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299640	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4148624	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs929235	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17418600-17453600	Weak transcription	Fetal Brain Female	brain
2	chr11:17428200-17450200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:17435000-17443200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr11:17435200-17460600	Weak transcription	Right Atrium	heart
5	chr11:17437400-17445000	Weak transcription	Pancreas	Pancrea
6	chr11:17437800-17448000	Enhancers	Dnd41	blood
7	chr11:17440400-17443400	Weak transcription	Fetal Thymus	thymus
8	chr11:17441400-17444000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr11:17441600-17444200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr11:17442000-17442800	Strong transcription	Brain Inferior Temporal Lobe	brain
11	chr11:17442000-17443000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:17442000-17443200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr11:17442200-17442800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:17442200-17443400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr11:17442400-17442800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:17442400-17443000	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr11:17442600-17442800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:17442600-17443000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr11:17442600-17443400	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr11:17442600-17443800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:17442600-17443800	Enhancers	Left Ventricle	heart
22	chr11:17442600-17444000	Enhancers	Psoas Muscle	Psoas

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