Variant report

Variant	rs11024399
Chromosome Location	chr11:17811711-17811712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17809972..17812196-chr11:17815890..17818080,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1012106	1.00[ASN][1000 genomes]
rs10734255	1.00[ASN][1000 genomes]
rs10766433	1.00[ASN][1000 genomes]
rs10788	1.00[CEU][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832821	1.00[ASN][1000 genomes]
rs10832822	1.00[ASN][1000 genomes]
rs10832823	1.00[ASN][1000 genomes]
rs11024354	1.00[ASN][1000 genomes]
rs11024400	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024402	0.89[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024405	1.00[ASN][1000 genomes]
rs11024406	1.00[ASN][1000 genomes]
rs11024408	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024409	0.89[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290375	1.00[ASN][1000 genomes]
rs12361234	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1236205	1.00[ASN][1000 genomes]
rs1236207	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12422210	1.00[ASN][1000 genomes]
rs1528	1.00[CEU][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2107428	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2336851	1.00[ASN][1000 genomes]
rs3858514	1.00[ASN][1000 genomes]
rs7125500	1.00[ASN][1000 genomes]
rs71484782	1.00[ASN][1000 genomes]
rs740320	1.00[ASN][1000 genomes]
rs757513	1.00[ASN][1000 genomes]
rs757515	1.00[ASN][1000 genomes]
rs757516	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832078	chr11:17780503-17953521	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1043973	chr11:17781560-17869896	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17792000-17815000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr11:17792000-17818400	Weak transcription	Right Atrium	heart
3	chr11:17796800-17828800	Weak transcription	Brain Germinal Matrix	brain
4	chr11:17798000-17819800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:17801600-17821800	Weak transcription	Spleen	Spleen
6	chr11:17802600-17819400	Weak transcription	Esophagus	oesophagus
7	chr11:17802800-17832400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:17803400-17815200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:17803400-17819400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:17804000-17819400	Weak transcription	Liver	Liver
11	chr11:17804800-17813800	Weak transcription	Pancreas	Pancrea
12	chr11:17805000-17819800	Weak transcription	Fetal Brain Male	brain
13	chr11:17805800-17829000	Weak transcription	Fetal Stomach	stomach
14	chr11:17806000-17837800	Weak transcription	Primary B cells from peripheral blood	blood
15	chr11:17806600-17815200	Weak transcription	Lung	lung
16	chr11:17806600-17817200	Weak transcription	Gastric	stomach
17	chr11:17806600-17819400	Weak transcription	Right Ventricle	heart
18	chr11:17806800-17867400	Weak transcription	Primary B cells from cord blood	blood
19	chr11:17807200-17812400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr11:17807200-17818600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr11:17807800-17812000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:17808200-17814000	Weak transcription	Brain Angular Gyrus	brain
23	chr11:17808200-17861400	Weak transcription	Thymus	Thymus
24	chr11:17808800-17813800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:17808800-17822200	Weak transcription	Adipose Nuclei	Adipose
26	chr11:17808800-17828600	Weak transcription	Fetal Brain Female	brain
27	chr11:17808800-17834600	Weak transcription	Aorta	Aorta
28	chr11:17809000-17812200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:17809000-17813600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:17809000-17815800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr11:17809000-17833200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr11:17809200-17812000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:17809200-17812000	Weak transcription	NHEK	skin
34	chr11:17809200-17824800	Weak transcription	Brain Cingulate Gyrus	brain
35	chr11:17809400-17812000	Weak transcription	NHDF-Ad	bronchial
36	chr11:17809400-17812400	Weak transcription	HMEC	breast
37	chr11:17809400-17819200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr11:17809600-17812000	Weak transcription	Primary hematopoietic stem cells	blood
39	chr11:17809600-17812200	Weak transcription	Osteobl	bone
40	chr11:17809600-17823600	Weak transcription	HSMMtube	muscle
41	chr11:17810000-17814600	Weak transcription	HepG2	liver
42	chr11:17810400-17822200	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr11:17810400-17829400	Weak transcription	Fetal Intestine Small	intestine
44	chr11:17811000-17817400	Weak transcription	Ovary	ovary
45	chr11:17811000-17830800	Weak transcription	Primary T cells from cord blood	blood
46	chr11:17811400-17813200	Enhancers	Muscle Satellite Cultured Cells	--
47	chr11:17811600-17812400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:17811600-17812600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:17811600-17812800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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