Variant report

Variant	rs10832823
Chromosome Location	chr11:17660579-17660580
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17658918..17660836-chr11:17665440..17668031,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1012106	1.00[ASN][1000 genomes]
rs10734255	1.00[ASN][1000 genomes]
rs10766433	1.00[ASN][1000 genomes]
rs10788	1.00[ASN][1000 genomes]
rs10832821	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024349	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11024354	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024399	1.00[ASN][1000 genomes]
rs11024400	1.00[ASN][1000 genomes]
rs11024402	1.00[ASN][1000 genomes]
rs11024405	1.00[ASN][1000 genomes]
rs11024406	1.00[ASN][1000 genomes]
rs11024408	1.00[ASN][1000 genomes]
rs11024409	1.00[ASN][1000 genomes]
rs12277962	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12281125	0.81[EUR][1000 genomes]
rs12290375	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12361234	1.00[ASN][1000 genomes]
rs1236205	1.00[ASN][1000 genomes]
rs1236207	1.00[ASN][1000 genomes]
rs12422210	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1528	1.00[ASN][1000 genomes]
rs2058003	0.92[EUR][1000 genomes]
rs2107428	1.00[ASN][1000 genomes]
rs2336851	1.00[ASN][1000 genomes]
rs3858514	1.00[ASN][1000 genomes]
rs4757556	0.82[EUR][1000 genomes]
rs7125500	1.00[ASN][1000 genomes]
rs71484782	1.00[ASN][1000 genomes]
rs72871849	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs740320	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs757513	1.00[ASN][1000 genomes]
rs757515	1.00[ASN][1000 genomes]
rs757516	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv897023	chr11:17617468-17667561	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv897024	chr11:17617468-17692011	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17653800-17668600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr11:17655600-17666800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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