Variant report

Variant	rs12277962
Chromosome Location	chr11:17655839-17655840
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17652276..17654406-chr11:17655549..17657899,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1003490	0.84[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10741730	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10832807	1.00[JPT][hapmap]
rs10832810	0.87[ASN][1000 genomes]
rs10832821	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10832822	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10832823	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11024330	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11024345	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs11024348	0.82[JPT][hapmap]
rs11024349	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024354	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11827077	0.87[ASN][1000 genomes]
rs12272104	0.87[ASN][1000 genomes]
rs12281125	0.89[ASN][1000 genomes]
rs12290375	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12361934	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs12422210	0.93[EUR][1000 genomes]
rs2058003	1.00[CEU][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4757551	1.00[ASN][1000 genomes]
rs4757552	0.85[CEU][hapmap];1.00[ASN][1000 genomes]
rs4757556	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60504216	0.87[ASN][1000 genomes]
rs61880560	0.87[ASN][1000 genomes]
rs61880563	1.00[ASN][1000 genomes]
rs7110462	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs7112338	1.00[JPT][hapmap]
rs7118838	1.00[JPT][hapmap]
rs7129066	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs72871849	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740320	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs740324	1.00[JPT][hapmap]
rs7928233	0.87[ASN][1000 genomes]
rs7948744	0.82[JPT][hapmap]
rs7949599	1.00[JPT][hapmap]
rs7950303	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv469938	chr11:17615203-17656148	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv467715	chr11:17615655-17656148	Enhancers Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv553587	chr11:17615655-17656148	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv897023	chr11:17617468-17667561	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv897024	chr11:17617468-17692011	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv520453	chr11:17625278-17656148	Enhancers Genic enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17653800-17668600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr11:17655400-17656200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:17655600-17666800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:17655800-17656200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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