Variant report

Variant	rs11024834
Chromosome Location	chr11:18869684-18869685
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:18869521..18872486-chr11:18872748..18874682,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10833006	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10833007	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11024835	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11512067	0.84[ASN][1000 genomes]
rs1384640	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1384641	0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1384642	1.00[CHB][hapmap];0.88[JPT][hapmap];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4237737	0.99[ASN][1000 genomes]
rs4325289	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4565877	0.82[AFR][1000 genomes]
rs4756970	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4756973	1.00[ASN][1000 genomes]
rs55899426	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs56062517	0.84[ASN][1000 genomes]
rs56382615	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs60013221	0.82[ASN][1000 genomes]
rs60532851	0.82[ASN][1000 genomes]
rs6483531	0.93[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7102774	0.84[ASN][1000 genomes]
rs7102779	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7103161	0.84[ASN][1000 genomes]
rs7111492	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7116498	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs72893636	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7927784	0.81[ASN][1000 genomes]
rs7930561	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7939084	0.83[ASN][1000 genomes]
rs975227	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	esv2758257	chr11:18818729-19082068	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2759806	chr11:18818729-19082068	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv428250	chr11:18818729-19082068	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18869400-18870000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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