Variant report

Variant	rs4325289
Chromosome Location	chr11:18887459-18887460
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10833006	0.97[ASN][1000 genomes]
rs10833007	0.97[ASN][1000 genomes]
rs11024834	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11024835	0.93[ASN][1000 genomes]
rs1384640	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1384641	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1384642	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1384648	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1813080	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1973238	0.83[EUR][1000 genomes]
rs2200174	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2403353	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4237737	0.94[ASN][1000 genomes]
rs4756973	0.93[ASN][1000 genomes]
rs7111492	0.96[ASN][1000 genomes]
rs7117857	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs975227	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	esv2758257	chr11:18818729-19082068	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2759806	chr11:18818729-19082068	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv428250	chr11:18818729-19082068	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv430322	chr11:18880428-18957197	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv832080	chr11:18882048-18975514	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv2750987	chr11:18887459-18975222	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18881800-18899800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:18886400-18888600	Enhancers	H1 Cell Line	embryonic stem cell
3	chr11:18886600-18888600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr11:18886800-18887800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:18886800-18888200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr11:18886800-18888600	Enhancers	H9 Cell Line	embryonic stem cell
7	chr11:18887000-18887600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr11:18887000-18888600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:18887200-18887600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr11:18887200-18887600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr11:18887200-18887600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr11:18887200-18887600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr11:18887400-18887600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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