Variant report

Variant	rs11025055
Chromosome Location	chr11:19228617-19228618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10741763	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10766534	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11025057	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11025061	0.96[ASN][1000 genomes]
rs11025062	0.94[ASN][1000 genomes]
rs2292061	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19222600-19231000	Weak transcription	Gastric	stomach
2	chr11:19223600-19230600	Weak transcription	Psoas Muscle	Psoas
3	chr11:19224200-19230000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:19224800-19230400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr11:19225000-19230400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:19227000-19230400	Enhancers	Fetal Heart	heart
7	chr11:19228200-19229400	Enhancers	Left Ventricle	heart
8	chr11:19228400-19229400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:19228600-19231200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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