Variant report

Variant	rs2292061
Chromosome Location	chr11:19245604-19245605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10741763	0.87[CHB][hapmap];0.86[CHD][hapmap];0.86[MEX][hapmap];0.86[ASN][1000 genomes]
rs10766534	0.87[CHB][hapmap];0.88[CHD][hapmap];0.86[MEX][hapmap];0.86[ASN][1000 genomes]
rs11025055	0.92[ASN][1000 genomes]
rs11025057	0.80[ASW][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11025061	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11025062	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1041249	chr11:19229878-19248268	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19239000-19261800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:19239600-19259000	Weak transcription	Brain Germinal Matrix	brain
3	chr11:19240000-19249800	Weak transcription	HMEC	breast
4	chr11:19240800-19246200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:19240800-19253400	Weak transcription	Small Intestine	intestine
6	chr11:19240800-19261600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:19241000-19246200	Weak transcription	Fetal Stomach	stomach
8	chr11:19241000-19246800	Weak transcription	Esophagus	oesophagus
9	chr11:19241000-19251000	Weak transcription	Gastric	stomach
10	chr11:19241000-19254200	Weak transcription	Hela-S3	cervix
11	chr11:19241000-19254400	Weak transcription	HSMM	muscle
12	chr11:19241000-19256000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:19241000-19261800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:19241800-19261200	Weak transcription	Primary B cells from cord blood	blood
15	chr11:19242000-19246400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:19243000-19245800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr11:19243000-19246200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr11:19243000-19254400	Weak transcription	NHDF-Ad	bronchial
19	chr11:19243200-19254200	Weak transcription	Osteobl	bone
20	chr11:19243200-19261600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr11:19243400-19246200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr11:19243400-19246400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:19243400-19246400	Weak transcription	Psoas Muscle	Psoas
24	chr11:19243400-19246800	Weak transcription	Left Ventricle	heart
25	chr11:19243400-19250000	Weak transcription	Placenta	Placenta
26	chr11:19243400-19255800	Weak transcription	Fetal Lung	lung
27	chr11:19243800-19246200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr11:19243800-19259600	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr11:19243800-19261800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr11:19243800-19261800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr11:19244000-19246800	Weak transcription	Right Atrium	heart
32	chr11:19244000-19248000	Strong transcription	Fetal Muscle Trunk	muscle
33	chr11:19244000-19260000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr11:19244200-19246200	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr11:19244200-19246200	Weak transcription	Thymus	Thymus
36	chr11:19244200-19246800	Strong transcription	Fetal Muscle Leg	muscle
37	chr11:19244200-19250600	Weak transcription	HSMMtube	muscle
38	chr11:19244200-19250600	Weak transcription	NHEK	skin
39	chr11:19244200-19251000	Weak transcription	Right Ventricle	heart
40	chr11:19244200-19254600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:19244200-19254600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:19244200-19259400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:19244200-19261800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr11:19244400-19246600	Weak transcription	Fetal Intestine Small	intestine
45	chr11:19244400-19248200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:19244400-19261800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr11:19244600-19246200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr11:19244600-19246800	Strong transcription	Fetal Intestine Large	intestine
49	chr11:19244600-19247000	Strong transcription	A549	lung
50	chr11:19244600-19247800	Strong transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links