Variant report

Variant	rs1102562
Chromosome Location	chr6:27157407-27157408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:27155406..27158362-chr6:27858378..27860998,5	K562	blood:
2	chr6:27155655..27157705-chr6:27862759..27864468,2	K562	blood:
3	chr6:27148219..27154668-chr6:27154722..27158254,9	K562	blood:
4	chr6:27145218..27148337-chr6:27151646..27158450,9	MCF-7	breast:
5	chr6:27154554..27158026-chr6:27757603..27761465,4	K562	blood:
6	chr6:27156508..27159438-chr6:27571250..27573740,2	K562	blood:
7	chr6:27155042..27157581-chr6:27762343..27765282,2	K562	blood:
8	chr6:27153641..27158263-chr6:27858563..27861801,5	K562	blood:
9	chr6:27155262..27157566-chr6:27266020..27269001,2	K562	blood:
10	chr6:27114939..27117742-chr6:27153749..27157823,5	K562	blood:
11	chr6:27154833..27157823-chr6:27782934..27785900,2	K562	blood:
12	chr6:27155528..27159493-chr6:27776465..27779576,3	K562	blood:
13	chr6:27155324..27157508-chr6:27634451..27636223,2	K562	blood:
14	chr6:27130515..27132785-chr6:27154818..27157852,3	K562	blood:
15	chr6:27155275..27158320-chr6:27568064..27571527,3	K562	blood:
16	chr6:27156417..27159630-chr6:27160529..27165919,7	K562	blood:
17	chr6:27154579..27158488-chr6:27757538..27761648,4	MCF-7	breast:
18	chr6:27156028..27157789-chr6:27774192..27775722,2	K562	blood:
19	chr6:27133928..27135511-chr6:27156341..27158260,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000217862	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000203813	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1102557	1.00[YRI][hapmap]
rs1102567	1.00[YRI][hapmap]
rs12196084	1.00[YRI][hapmap]
rs858965	1.00[YRI][hapmap]
rs858996	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	esv3356749	chr6:27155446-27163661	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27156800-27158400	Enhancers	Fetal Intestine Small	intestine
2	chr6:27156800-27161200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:27156800-27162800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:27156800-27173000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:27157000-27157600	Enhancers	H9 Cell Line	embryonic stem cell
6	chr6:27157000-27157800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:27157200-27157600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:27157200-27157600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:27157200-27157800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:27157400-27157600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:27157400-27157600	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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