Variant report

Variant	rs858965
Chromosome Location	chr6:27146749-27146750
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27145577..27147398-chr6:27220465..27222539,2	MCF-7	breast:
2	chr6:27144021..27146883-chr6:27258754..27261461,2	MCF-7	breast:
3	chr6:27144211..27146855-chr6:27719701..27721733,2	K562	blood:
4	chr6:27144940..27148492-chr6:27773557..27776885,4	MCF-7	breast:
5	chr6:27105944..27107805-chr6:27146440..27148805,2	MCF-7	breast:
6	chr6:27127283..27131812-chr6:27144311..27148515,7	MCF-7	breast:
7	chr6:27116861..27118975-chr6:27145251..27147249,2	MCF-7	breast:
8	chr6:27144310..27147077-chr6:27519122..27521076,2	K562	blood:
9	chr6:27145758..27149060-chr6:27154386..27156904,3	MCF-7	breast:
10	chr6:27145074..27147467-chr6:27777007..27779595,2	K562	blood:
11	chr6:27145253..27149186-chr6:27150759..27152469,4	K562	blood:
12	chr6:27124335..27127582-chr6:27143975..27147070,5	MCF-7	breast:
13	chr6:27144364..27147244-chr6:27219253..27220807,2	K562	blood:
14	chr6:27145218..27148337-chr6:27151646..27158450,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000112812	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000217862	Chromatin interaction
ENSG00000198339	Chromatin interaction
ENSG00000203813	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1102557	1.00[YRI][hapmap]
rs1102562	1.00[YRI][hapmap]
rs1102567	1.00[YRI][hapmap]
rs12196084	1.00[YRI][hapmap]
rs858996	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27143800-27146800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:27143800-27146800	Active TSS	Fetal Lung	lung
3	chr6:27143800-27146800	Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr6:27143800-27147000	Active TSS	HSMM	muscle
5	chr6:27143800-27147400	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr6:27143800-27147400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr6:27143800-27147600	Active TSS	H9 Cell Line	embryonic stem cell
8	chr6:27143800-27147600	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr6:27144000-27146800	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr6:27144000-27146800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:27144000-27146800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:27144000-27146800	Active TSS	Ovary	ovary
13	chr6:27144000-27147000	Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr6:27144000-27147000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:27144000-27147000	Active TSS	Rectal Mucosa Donor 31	rectum
16	chr6:27144000-27147000	Active TSS	NH-A	brain
17	chr6:27144000-27147200	Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr6:27144000-27147400	Active TSS	H1 Cell Line	embryonic stem cell
19	chr6:27144000-27147600	Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr6:27144000-27147800	Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr6:27144200-27146800	Active TSS	Muscle Satellite Cultured Cells	--
22	chr6:27144200-27146800	Active TSS	NHDF-Ad	bronchial
23	chr6:27144200-27147000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:27144200-27147000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:27144200-27147000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:27144200-27147000	Active TSS	A549	lung
27	chr6:27144200-27147000	Active TSS	HSMMtube	muscle
28	chr6:27144200-27147000	Active TSS	Osteobl	bone
29	chr6:27144200-27147200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr6:27144200-27147200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:27144200-27147400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:27144200-27147600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:27144200-27147600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr6:27144400-27146800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:27144400-27146800	Active TSS	Brain Anterior Caudate	brain
36	chr6:27144400-27146800	Active TSS	Brain Inferior Temporal Lobe	brain
37	chr6:27144400-27146800	Active TSS	Colonic Mucosa	Colon
38	chr6:27144400-27146800	Active TSS	Duodenum Smooth Muscle	Duodenum
39	chr6:27144400-27146800	Active TSS	Fetal Intestine Large	intestine
40	chr6:27144400-27146800	Active TSS	Fetal Intestine Small	intestine
41	chr6:27144400-27146800	Active TSS	Right Atrium	heart
42	chr6:27144400-27146800	Active TSS	NHLF	lung
43	chr6:27144400-27147000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr6:27144400-27147000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:27144400-27147000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:27144400-27147000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:27144400-27147000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr6:27144400-27147000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr6:27144400-27147000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr6:27144400-27147000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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