Variant report

Variant	rs11027303
Chromosome Location	chr11:23563008-23563009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11529735	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12223861	0.81[ASN][1000 genomes]
rs12287364	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61876585	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6483961	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6483962	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6483963	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7110430	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7122789	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122954	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7130466	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7946969	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832087	chr11:23404474-23569183	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1038101	chr11:23556680-23685548	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23561000-23563200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr11:23561400-23564000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr11:23561400-23564000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr11:23561600-23564000	Weak transcription	Fetal Intestine Large	intestine
5	chr11:23561600-23577600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:23561800-23564000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:23561800-23565400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:23562200-23563200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr11:23562600-23563600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:23562600-23564800	Enhancers	Dnd41	blood
11	chr11:23562800-23563200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:23563000-23563200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:23563000-23563200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:23563000-23565400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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