Variant report

Variant	rs7122954
Chromosome Location	chr11:23564329-23564330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10741985	0.80[EUR][1000 genomes]
rs10834134	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11027303	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11027304	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11027305	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11529734	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11529735	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12287364	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1381723	0.83[AMR][1000 genomes]
rs2203869	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2203870	0.86[ASN][1000 genomes]
rs2222267	0.89[ASN][1000 genomes]
rs35398780	0.89[ASN][1000 genomes]
rs61876585	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6483960	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7122789	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7130466	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7946969	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9943612	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832087	chr11:23404474-23569183	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1038101	chr11:23556680-23685548	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv553757	chr11:23564329-23896729	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23561600-23577600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:23561800-23565400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:23562600-23564800	Enhancers	Dnd41	blood
4	chr11:23563000-23565400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:23563400-23565400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:23564000-23564400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:23564000-23564600	Enhancers	Fetal Intestine Large	intestine
8	chr11:23564000-23564600	Enhancers	Fetal Intestine Small	intestine
9	chr11:23564000-23565400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:23564000-23565400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:23564000-23565600	Enhancers	HUVEC	blood vessel
12	chr11:23564200-23565200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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