Variant report

Variant	rs11027304
Chromosome Location	chr11:23564828-23564829
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10400283	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10834134	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11027283	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11027305	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794252	0.85[ASN][1000 genomes]
rs1381723	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2203869	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6483960	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6483961	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6483962	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6483963	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7110430	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7122954	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7935902	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832087	chr11:23404474-23569183	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1038101	chr11:23556680-23685548	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv553757	chr11:23564329-23896729	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23561600-23577600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:23561800-23565400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:23563000-23565400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:23563400-23565400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:23564000-23565400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:23564000-23565400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr11:23564000-23565600	Enhancers	HUVEC	blood vessel
8	chr11:23564200-23565200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:23564400-23565400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:23564800-23565400	Weak transcription	Dnd41	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links