Variant report

Variant	rs11028116
Chromosome Location	chr11:24738329-24738330
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10742047	1.00[EUR][1000 genomes]
rs11028140	1.00[EUR][1000 genomes]
rs12270550	1.00[EUR][1000 genomes]
rs12279481	1.00[EUR][1000 genomes]
rs12280090	1.00[EUR][1000 genomes]
rs12281099	1.00[EUR][1000 genomes]
rs12295428	1.00[EUR][1000 genomes]
rs1396847	1.00[EUR][1000 genomes]
rs1858159	1.00[EUR][1000 genomes]
rs57637255	1.00[EUR][1000 genomes]
rs6484056	1.00[EUR][1000 genomes]
rs73434992	1.00[EUR][1000 genomes]
rs73434995	1.00[EUR][1000 genomes]
rs73434997	1.00[EUR][1000 genomes]
rs9919580	1.00[EUR][1000 genomes]
rs9919604	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052730	chr11:24695821-25272497	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1053055	chr11:24700012-25293551	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv990306	chr11:24736631-24739237	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24737800-24738400	Enhancers	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links