Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:32451714-32451984	H1-neurons	neurons:	n/a	n/a
2	SUZ12	chr11:32447620-32453523	H1-hESC	embryonic stem cell:	n/a	n/a
3	JUND	chr11:32451915-32452160	H1-hESC	embryonic stem cell:	n/a	n/a
4	CTBP2	chr11:32451694-32453467	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr11:32451719-32452007	H1-neurons	neurons:	n/a	n/a
6	ZNF143	chr11:32451787-32452104	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
WT1	TF binding region

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10767934	0.80[EUR][1000 genomes]
rs10835913	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10835914	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10835915	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11031787	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11031788	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12575247	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1569776	0.80[EUR][1000 genomes]
rs1799925	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2234585	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34163689	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3847589	0.80[EUR][1000 genomes]
rs3858449	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3858451	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4140414	0.80[EUR][1000 genomes]
rs5030141	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5030171	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs5030234	0.80[EUR][1000 genomes]
rs5030270	0.81[EUR][1000 genomes]
rs59518979	0.83[EUR][1000 genomes]
rs61889255	0.83[EUR][1000 genomes]
rs61889256	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1044547	chr11:32435753-32465233	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2753303	chr11:32447324-32494924	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1051559	chr11:32447347-32465233	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32448800-32454800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
2	chr11:32449600-32452400	Weak transcription	Pancreas	Pancrea
3	chr11:32450000-32452200	Bivalent/Poised TSS	Fetal Kidney	kidney
4	chr11:32450200-32452200	Weak transcription	Right Atrium	heart
5	chr11:32450200-32457400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr11:32451200-32453200	Weak transcription	K562	blood
7	chr11:32451600-32452000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
8	chr11:32451600-32452000	Enhancers	Dnd41	blood
9	chr11:32451600-32452600	Active TSS	Ovary	ovary
10	chr11:32451800-32452000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
11	chr11:32451800-32452000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
12	chr11:32451800-32452000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:32451800-32452000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
14	chr11:32451800-32452200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:32451800-32452200	Enhancers	Right Ventricle	heart
16	chr11:32451800-32452400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
17	chr11:32451800-32452800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
18	chr11:32451800-32452800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
19	chr11:32451800-32452800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell

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