Variant report

Variant	rs4140414
Chromosome Location	chr11:32418605-32418606
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:32418279..32421670-chr11:32424343..32426756,3	K562	blood:
2	chr11:32414284..32417176-chr11:32418319..32421153,2	K562	blood:
3	chr11:32414284..32415861-chr11:32418319..32421122,2	K562	blood:
4	chr11:32417288..32419262-chr11:32603773..32605536,2	K562	blood:
5	chr11:32418279..32421670-chr11:32423686..32426756,5	K562	blood:

Variant related genes	Relation type
ENSG00000149100	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10767934	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10767935	0.95[ASN][1000 genomes]
rs10835894	0.90[ASN][1000 genomes]
rs10835896	0.92[ASN][1000 genomes]
rs10835897	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10835900	0.90[ASN][1000 genomes]
rs10835901	0.95[ASN][1000 genomes]
rs10835902	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10835903	0.95[ASN][1000 genomes]
rs10835905	0.95[ASN][1000 genomes]
rs10835906	0.95[ASN][1000 genomes]
rs11031755	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11031757	0.92[ASN][1000 genomes]
rs11031760	0.91[ASN][1000 genomes]
rs11031761	0.92[ASN][1000 genomes]
rs11031762	0.92[ASN][1000 genomes]
rs11031763	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11031767	0.94[ASN][1000 genomes]
rs11031769	0.88[ASN][1000 genomes]
rs11031770	0.87[ASN][1000 genomes]
rs11031778	0.80[EUR][1000 genomes]
rs12365223	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12365511	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12574749	0.92[ASN][1000 genomes]
rs12575247	0.80[EUR][1000 genomes]
rs1569776	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16754	0.80[ASN][1000 genomes]
rs16923242	0.95[ASN][1000 genomes]
rs2234585	0.80[EUR][1000 genomes]
rs3847589	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3858440	0.95[ASN][1000 genomes]
rs3858441	0.95[ASN][1000 genomes]
rs3858442	0.95[ASN][1000 genomes]
rs3858443	0.87[ASN][1000 genomes]
rs3901671	0.95[ASN][1000 genomes]
rs3932463	0.94[ASN][1000 genomes]
rs5030171	0.80[EUR][1000 genomes]
rs5030193	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5030203	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5030234	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5030241	0.94[ASN][1000 genomes]
rs5030268	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs5030270	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5030277	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5030280	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5030281	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5030310	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59666608	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7116169	0.92[ASN][1000 genomes]
rs7125543	0.95[ASN][1000 genomes]
rs7125816	0.94[ASN][1000 genomes]
rs7925851	0.81[ASN][1000 genomes]
rs7926521	0.92[ASN][1000 genomes]
rs7926620	0.92[ASN][1000 genomes]
rs7938016	0.95[ASN][1000 genomes]
rs7939496	0.81[ASN][1000 genomes]
rs7943119	0.81[ASN][1000 genomes]
rs7946388	0.92[ASN][1000 genomes]
rs7951745	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1038188	chr11:32410305-32449799	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32408600-32421600	Weak transcription	Left Ventricle	heart
2	chr11:32409400-32422000	Weak transcription	Fetal Kidney	kidney
3	chr11:32412600-32421800	Strong transcription	K562	blood
4	chr11:32414800-32424200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr11:32417200-32419000	Flanking Active TSS	Dnd41	blood
6	chr11:32417600-32422200	Strong transcription	Ovary	ovary
7	chr11:32418000-32418800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:32418200-32418800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:32418200-32423600	Weak transcription	Spleen	Spleen
10	chr11:32418600-32418800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:32418600-32421600	Weak transcription	Fetal Heart	heart

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